Variant report

Variant	rs559263990
Chromosome Location	chr1:190547776-190547777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv872760	chr1:190377988-190577336	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv275092	chr1:190529490-190560762	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv523002	chr1:190531642-190615637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv872767	chr1:190533711-190664289	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv998846	chr1:190535266-190562543	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190547200-190547800	Active TSS	Brain Substantia Nigra	brain
2	chr1:190547200-190548000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:190547200-190548000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:190547200-190549200	Active TSS	Brain Anterior Caudate	brain
5	chr1:190547400-190547800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:190547400-190547800	Enhancers	Brain Hippocampus Middle	brain
7	chr1:190547400-190548000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:190547400-190548000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:190547400-190548000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr1:190547400-190548600	Active TSS	Brain Cingulate Gyrus	brain
11	chr1:190547600-190547800	Enhancers	Fetal Heart	heart
12	chr1:190547600-190548000	Active TSS	Brain Angular Gyrus	brain
13	chr1:190547600-190548000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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