Variant report

Variant	rs55926400
Chromosome Location	chr6:114127355-114127356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56661702	1.00[EUR][1000 genomes]
rs751923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114125000-114132600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:114125600-114132400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:114126000-114127400	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:114126200-114127800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:114126400-114127400	Enhancers	Fetal Lung	lung
6	chr6:114126400-114127600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr6:114126600-114127400	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:114126600-114127600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:114126600-114127600	Enhancers	Brain Hippocampus Middle	brain
10	chr6:114126600-114127800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:114126800-114127600	Enhancers	Primary B cells from cord blood	blood
12	chr6:114126800-114127600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:114126800-114127600	Enhancers	Ovary	ovary
14	chr6:114126800-114127600	Enhancers	Psoas Muscle	Psoas
15	chr6:114127000-114127400	Enhancers	HSMM	muscle
16	chr6:114127000-114129400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:114127200-114127600	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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