The 2.0 version of rSNPBase

Variant report

Variant rs55927088
Chromosome Location chr2:191225988-191225989
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:191211400-191238000 Weak transcription Hela-S3 cervix
2 chr2:191214000-191230400 Weak transcription Aorta Aorta
3 chr2:191219400-191234000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr2:191219600-191243800 Weak transcription Gastric stomach
5 chr2:191223800-191236800 Weak transcription Psoas Muscle Psoas
6 chr2:191224000-191235600 Weak transcription Spleen Spleen
7 chr2:191224200-191230400 Weak transcription Esophagus oesophagus
8 chr2:191224400-191226000 Active TSS Brain Cingulate Gyrus brain
9 chr2:191224400-191227200 Active TSS Brain Inferior Temporal Lobe brain
10 chr2:191224600-191226600 Active TSS Brain Substantia Nigra brain
11 chr2:191224800-191236200 Strong transcription Monocytes-CD14+_RO01746 blood
12 chr2:191225000-191227800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr2:191225000-191229400 Weak transcription Left Ventricle heart
14 chr2:191225000-191230400 Weak transcription Lung lung
15 chr2:191225000-191232000 Weak transcription Ovary ovary
16 chr2:191225000-191232800 Weak transcription HUVEC blood vessel
17 chr2:191225000-191234200 Weak transcription Right Ventricle heart
18 chr2:191225000-191235600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr2:191225000-191235600 Weak transcription Pancreas Pancrea
20 chr2:191225000-191236400 Strong transcription Primary monocytes fromperipheralblood blood
21 chr2:191225000-191237400 Weak transcription Fetal Brain Female brain
22 chr2:191225000-191237600 Weak transcription Small Intestine intestine
23 chr2:191225000-191242800 Weak transcription Placenta Placenta
24 chr2:191225200-191226000 Enhancers Primary B cells from peripheral blood blood
25 chr2:191225200-191226000 Enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr2:191225200-191226000 Active TSS Brain Anterior Caudate brain
27 chr2:191225200-191226000 Enhancers Colon Smooth Muscle Colon
28 chr2:191225200-191226200 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr2:191225200-191226400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:191225200-191226400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr2:191225200-191226400 Active TSS Brain Hippocampus Middle brain
32 chr2:191225200-191226600 Enhancers Primary T helper naive cells fromperipheralblood blood
33 chr2:191225200-191227200 Enhancers Primary T helper cells fromperipheralblood blood
34 chr2:191225200-191227600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr2:191225200-191227800 Weak transcription Duodenum Mucosa Duodenum
36 chr2:191225200-191228600 Weak transcription Fetal Intestine Large intestine
37 chr2:191225200-191229400 Weak transcription Fetal Muscle Leg muscle
38 chr2:191225200-191229600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr2:191225200-191229600 Weak transcription Adipose Nuclei Adipose
40 chr2:191225200-191229800 Weak transcription Fetal Muscle Trunk muscle
41 chr2:191225200-191230000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr2:191225200-191230400 Weak transcription Fetal Intestine Small intestine
43 chr2:191225200-191230400 Weak transcription Fetal Stomach stomach
44 chr2:191225200-191231000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr2:191225200-191231000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr2:191225200-191231800 Weak transcription HSMMtube muscle
47 chr2:191225200-191232000 Weak transcription HepG2 liver
48 chr2:191225200-191232000 Weak transcription Osteobl bone
49 chr2:191225200-191233000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr2:191225200-191233400 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015