Variant report

Variant	rs55927421
Chromosome Location	chr6:36175441-36175442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36164484..36166000-chr6:36173617..36176370,2	MCF-7	breast:
2	chr6:36174700..36176820-chr6:36188962..36190706,2	K562	blood:
3	chr6:36173731..36176307-chr6:36177240..36182488,6	K562	blood:
4	chr6:36173638..36177539-chr6:36188000..36190986,3	MCF-7	breast:
5	chr6:36169055..36172686-chr6:36173659..36177382,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59752650	1.00[AFR][1000 genomes]
rs73413645	1.00[AMR][1000 genomes]
rs73413691	0.88[AFR][1000 genomes]
rs73415515	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415528	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36164400-36203000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36166200-36192200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr6:36166400-36176000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:36166400-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:36166600-36200200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:36166800-36185200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:36166800-36201800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:36167000-36188000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:36167000-36201800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:36167200-36201400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:36167400-36191600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:36167400-36201600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:36167600-36184000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:36167600-36199800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:36167600-36201200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36167800-36188000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:36167800-36188400	Strong transcription	Osteobl	bone
18	chr6:36167800-36192000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:36167800-36201400	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr6:36168000-36176400	Strong transcription	NHEK	skin
21	chr6:36168000-36180200	Strong transcription	Aorta	Aorta
22	chr6:36168000-36180400	Strong transcription	NHLF	lung
23	chr6:36168000-36188000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:36168000-36188000	Strong transcription	HSMMtube	muscle
25	chr6:36168000-36190600	Strong transcription	HSMM	muscle
26	chr6:36168000-36191200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:36168000-36192400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:36168000-36196800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:36168000-36200400	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr6:36168000-36201400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:36168200-36186000	Strong transcription	Right Ventricle	heart
32	chr6:36168200-36188200	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:36168200-36188400	Strong transcription	Brain Anterior Caudate	brain
34	chr6:36168200-36188800	Strong transcription	HUVEC	blood vessel
35	chr6:36168200-36195400	Strong transcription	Placenta	Placenta
36	chr6:36168600-36180400	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr6:36169400-36188000	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr6:36169400-36201800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:36169600-36176200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:36169600-36177800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:36169600-36180600	Strong transcription	Esophagus	oesophagus
42	chr6:36169600-36187600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:36169600-36188000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:36169600-36188800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:36169800-36175600	Weak transcription	Hela-S3	cervix
46	chr6:36169800-36188400	Strong transcription	Brain Hippocampus Middle	brain
47	chr6:36170000-36187600	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:36170000-36201800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:36170200-36177600	Weak transcription	Psoas Muscle	Psoas
50	chr6:36170400-36177400	Strong transcription	Gastric	stomach

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