Variant report

Variant	rs55927843
Chromosome Location	chr2:233928505-233928506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233923368..233925539-chr2:233928371..233930307,2	K562	blood:

Variant related genes	Relation type
ENSG00000168918	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2233389	0.86[ASN][1000 genomes]
rs73107154	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv520361	chr2:233926201-233929545	Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233924400-233928800	Active TSS	Brain Hippocampus Middle	brain
2	chr2:233924600-233929200	Active TSS	Rectal Smooth Muscle	rectum
3	chr2:233924800-233929800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr2:233925200-233930000	Enhancers	Stomach Mucosa	stomach
5	chr2:233925400-233930000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr2:233925800-233929000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr2:233926000-233929200	Flanking Active TSS	HepG2	liver
8	chr2:233926200-233928800	Enhancers	Fetal Intestine Large	intestine
9	chr2:233926200-233929200	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr2:233926200-233929800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr2:233926400-233928800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
12	chr2:233926400-233928800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr2:233926400-233928800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:233926400-233929000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr2:233926400-233929800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
16	chr2:233926600-233930000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:233926800-233928800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:233926800-233929000	Enhancers	Gastric	stomach
19	chr2:233926800-233929800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr2:233926800-233931000	Weak transcription	Pancreas	Pancrea
21	chr2:233926800-233931800	Weak transcription	K562	blood
22	chr2:233927000-233929400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr2:233927200-233928800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
24	chr2:233927200-233928800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr2:233927200-233928800	Genic enhancers	Fetal Intestine Small	intestine
26	chr2:233927200-233928800	Enhancers	Fetal Stomach	stomach
27	chr2:233927200-233929200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:233927200-233929200	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:233927200-233929400	Enhancers	Lung	lung
30	chr2:233927400-233928600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr2:233927400-233929000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr2:233927400-233929000	Enhancers	Placenta	Placenta
33	chr2:233927400-233929000	Enhancers	Left Ventricle	heart
34	chr2:233927400-233929200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr2:233927400-233929400	Enhancers	Fetal Muscle Trunk	muscle
36	chr2:233927400-233929800	Enhancers	Fetal Muscle Leg	muscle
37	chr2:233927400-233930000	Enhancers	Adipose Nuclei	Adipose
38	chr2:233927400-233930000	Enhancers	Right Atrium	heart
39	chr2:233927400-233930000	Genic enhancers	Spleen	Spleen
40	chr2:233927600-233928600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:233927600-233929000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:233927600-233929200	Enhancers	Liver	Liver
43	chr2:233927600-233929400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr2:233927600-233929400	Genic enhancers	Dnd41	blood
45	chr2:233927800-233928600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr2:233927800-233928800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr2:233927800-233929000	Weak transcription	Fetal Lung	lung
48	chr2:233927800-233929200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr2:233927800-233929400	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr2:233927800-233929400	Enhancers	Sigmoid Colon	Sigmoid Colon

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