Variant report

Variant	rs55928711
Chromosome Location	chr2:77013176-77013177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10520167	1.00[EUR][1000 genomes]
rs17040484	1.00[EUR][1000 genomes]
rs61202596	1.00[EUR][1000 genomes]
rs72921669	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009400-77013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:77011400-77014600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:77012400-77014200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:77012800-77013400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:77013000-77014400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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