Variant report

Variant	rs55930002
Chromosome Location	chr4:31238501-31238502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28456269	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28712329	0.89[EUR][1000 genomes]
rs4129017	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6824937	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73814524	0.82[ASN][1000 genomes]
rs7661521	0.85[EUR][1000 genomes]
rs7675813	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9994155	0.82[ASN][1000 genomes]
rs9996441	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv878812	chr4:31202669-31354090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31236000-31238600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31236800-31238600	Weak transcription	NHEK	skin
3	chr4:31237400-31238800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:31237600-31239200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:31237800-31238600	Enhancers	Left Ventricle	heart
6	chr4:31237800-31239000	Enhancers	Adipose Nuclei	Adipose
7	chr4:31238000-31238600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:31238000-31239000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:31238200-31239000	Enhancers	Fetal Heart	heart
10	chr4:31238200-31239200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:31238400-31239200	Enhancers	NH-A	brain
12	chr4:31238400-31239400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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