Variant report

Variant	rs559301172
Chromosome Location	chr6:24325207-24325208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601147	chr6:24322287-24326144	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv601148	chr6:24322287-24326596	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601149	chr6:24322287-24327501	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv601150	chr6:24323858-24326596	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv601151	chr6:24323858-24327501	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv511339	chr6:24323858-24330240	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3473862	chr6:24324953-24328068	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv511857	chr6:24325054-24328406	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3473864	chr6:24325173-24329471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24316400-24326800	Weak transcription	Pancreas	Pancrea
2	chr6:24322400-24325400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:24323600-24325600	Enhancers	A549	lung
4	chr6:24323800-24325400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:24324000-24325400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:24324200-24329400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:24324400-24332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:24324600-24325400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:24324600-24329200	Weak transcription	NHEK	skin
10	chr6:24324600-24330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:24324600-24332000	Weak transcription	HMEC	breast
12	chr6:24324600-24332200	Weak transcription	HSMMtube	muscle
13	chr6:24324800-24329000	Weak transcription	Fetal Kidney	kidney
14	chr6:24325000-24325400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:24325000-24329000	Weak transcription	NH-A	brain
16	chr6:24325000-24329400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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