Variant report

Variant	rs559302480
Chromosome Location	chr4:76411925-76411926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3378956	chr4:76411853-76414301	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76392600-76434800	Weak transcription	Gastric	stomach
2	chr4:76394600-76424600	Weak transcription	Right Ventricle	heart
3	chr4:76395800-76437000	Weak transcription	Aorta	Aorta
4	chr4:76395800-76437000	Weak transcription	Lung	lung
5	chr4:76395800-76437000	Weak transcription	Pancreas	Pancrea
6	chr4:76396200-76424400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:76396200-76437000	Weak transcription	Esophagus	oesophagus
8	chr4:76397200-76414600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:76397800-76437000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:76398200-76415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:76398200-76434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:76398800-76437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:76399400-76434400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:76400600-76437000	Weak transcription	Spleen	Spleen
15	chr4:76401000-76436200	Weak transcription	Brain Angular Gyrus	brain
16	chr4:76401800-76412400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:76402000-76412200	Strong transcription	Adipose Nuclei	Adipose
18	chr4:76402000-76418600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:76402200-76412200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:76402200-76412200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:76402200-76422000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:76402200-76423000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:76402200-76425800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr4:76402400-76412000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr4:76402400-76418400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:76402400-76418800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr4:76402400-76419200	Strong transcription	Liver	Liver
28	chr4:76402400-76425800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:76402600-76423200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:76402800-76417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr4:76403000-76423800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:76403600-76418800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:76403800-76412200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:76403800-76412200	Strong transcription	Fetal Intestine Large	intestine
35	chr4:76403800-76412400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:76403800-76433600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr4:76404200-76413400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:76404200-76413400	Weak transcription	A549	lung
39	chr4:76404200-76419400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:76404400-76419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:76404400-76422800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:76404800-76418400	Strong transcription	Placenta	Placenta
43	chr4:76404800-76422800	Strong transcription	Dnd41	blood
44	chr4:76405200-76412000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:76405200-76412200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:76405400-76422600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:76405600-76434400	Weak transcription	Fetal Heart	heart
48	chr4:76406000-76436600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:76406400-76413800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:76406600-76438800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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