Variant report

Variant	rs55931955
Chromosome Location	chr2:11347941-11347942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11343484..11345478-chr2:11346697..11348958,2	MCF-7	breast:
2	chr2:11347712..11351765-chr2:11481516..11486015,4	K562	blood:
3	chr2:11343502..11345866-chr2:11345894..11348004,3	K562	blood:

Variant related genes	Relation type
ENSG00000134318	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10183373	0.83[AFR][1000 genomes]
rs10201229	0.83[AFR][1000 genomes]
rs10205022	0.83[AFR][1000 genomes]
rs10495580	0.91[AFR][1000 genomes]
rs10495581	1.00[AFR][1000 genomes]
rs12329049	0.91[AFR][1000 genomes]
rs12329273	0.91[AFR][1000 genomes]
rs12329341	0.91[AFR][1000 genomes]
rs13388427	0.83[AFR][1000 genomes]
rs13416047	0.83[AFR][1000 genomes]
rs13420367	0.91[AFR][1000 genomes]
rs13431906	0.91[AFR][1000 genomes]
rs1375853	0.83[AFR][1000 genomes]
rs28441302	0.83[AFR][1000 genomes]
rs4267491	0.83[AFR][1000 genomes]
rs6705981	1.00[AFR][1000 genomes]
rs6748868	1.00[AFR][1000 genomes]
rs7583049	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012083	chr2:11316299-11350604	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3395022	chr2:11316915-11426380	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1013570	chr2:11321519-11405246	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
2	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
3	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
4	chr2:11299200-11357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:11310600-11433000	Weak transcription	Pancreas	Pancrea
6	chr2:11314600-11364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:11315800-11367400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:11316200-11354200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:11316400-11351800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:11318600-11359200	Weak transcription	Fetal Heart	heart
11	chr2:11319000-11364200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:11320800-11377000	Strong transcription	HepG2	liver
13	chr2:11326000-11356600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:11328800-11367600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:11329200-11364400	Strong transcription	Liver	Liver
16	chr2:11329200-11369200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:11330200-11353400	Weak transcription	Gastric	stomach
18	chr2:11332400-11357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr2:11333400-11386200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:11333600-11352200	Weak transcription	Psoas Muscle	Psoas
21	chr2:11333800-11353400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:11334400-11363600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:11336200-11354400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:11337000-11367400	Weak transcription	Brain Angular Gyrus	brain
25	chr2:11337400-11350400	Weak transcription	Lung	lung
26	chr2:11337400-11351800	Weak transcription	Fetal Brain Female	brain
27	chr2:11337600-11356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:11337600-11362600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr2:11338000-11354000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:11338400-11367400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr2:11338600-11373400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr2:11339600-11351800	Weak transcription	Thymus	Thymus
33	chr2:11339800-11350600	Weak transcription	Fetal Stomach	stomach
34	chr2:11339800-11356200	Weak transcription	Stomach Mucosa	stomach
35	chr2:11339800-11359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:11339800-11360000	Weak transcription	Spleen	Spleen
37	chr2:11339800-11382600	Weak transcription	Esophagus	oesophagus
38	chr2:11340200-11355000	Weak transcription	Brain Substantia Nigra	brain
39	chr2:11340600-11369400	Weak transcription	Colonic Mucosa	Colon
40	chr2:11340800-11354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:11340800-11361200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:11341200-11352400	Weak transcription	Brain Anterior Caudate	brain
43	chr2:11341400-11351800	Weak transcription	Fetal Muscle Leg	muscle
44	chr2:11341400-11352000	Weak transcription	Fetal Thymus	thymus
45	chr2:11341400-11353600	Weak transcription	Fetal Brain Male	brain
46	chr2:11341400-11354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:11341400-11355800	Weak transcription	Brain Germinal Matrix	brain
48	chr2:11341400-11358400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr2:11341600-11353000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr2:11341600-11384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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