Variant report

Variant	rs559321658
Chromosome Location	chr4:152843139-152843140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3370025	chr4:152842731-152843226	Enhancers Weak transcription Flanking Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus
2	chr4:152839200-152843400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152842200-152844000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:152842200-152844800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:152842400-152843400	Enhancers	HSMM	muscle
6	chr4:152842400-152843600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:152842400-152844000	Enhancers	Osteobl	bone
8	chr4:152842400-152844200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:152842600-152843200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:152842600-152843200	Enhancers	NHEK	skin
11	chr4:152842600-152844000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:152842600-152844000	Enhancers	NHDF-Ad	bronchial
13	chr4:152842800-152843200	Enhancers	HMEC	breast
14	chr4:152842800-152843400	Enhancers	NHLF	lung
15	chr4:152842800-152843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:152842800-152843800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:152843000-152843200	Flanking Active TSS	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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