Variant report

Variant	rs559343
Chromosome Location	chr15:55407763-55407764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11071168	0.95[ASN][1000 genomes]
rs2572034	0.98[ASN][1000 genomes]
rs2641583	0.99[ASN][1000 genomes]
rs28417136	0.94[AFR][1000 genomes]
rs28524517	0.85[EUR][1000 genomes]
rs28572587	0.86[AFR][1000 genomes]
rs28670780	0.85[EUR][1000 genomes]
rs28694196	0.92[AFR][1000 genomes]
rs4774202	0.93[EUR][1000 genomes]
rs4774751	0.85[EUR][1000 genomes]
rs486913	0.98[ASN][1000 genomes]
rs496232	0.86[AFR][1000 genomes]
rs501639	1.00[AFR][1000 genomes]
rs501898	0.98[AFR][1000 genomes]
rs508482	0.94[ASN][1000 genomes]
rs527015	0.97[AFR][1000 genomes]
rs528628	1.00[AFR][1000 genomes]
rs554383	1.00[AFR][1000 genomes]
rs559069	0.99[ASN][1000 genomes]
rs561001	1.00[AFR][1000 genomes]
rs561702	0.98[AFR][1000 genomes]
rs563795	0.94[AFR][1000 genomes]
rs564740	0.97[AFR][1000 genomes]
rs62018202	0.95[ASN][1000 genomes]
rs6493748	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493749	0.95[AFR][1000 genomes]
rs6493767	0.85[EUR][1000 genomes]
rs692886	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167792	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55405200-55416800	Weak transcription	Fetal Lung	lung
2	chr15:55407400-55407800	Enhancers	HUES48 Cell Line	embryonic stem cell

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