Variant report

Variant	rs559344886
Chromosome Location	chr9:107951089-107951090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:107951053-107951368	Hela-S3	cervix:	n/a	n/a
2	RAD21	chr9:107951070-107951279	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr9:107951080-107951230	HCPEpiC	choroid plexus:	n/a	n/a
4	RAD21	chr9:107951047-107951346	SK-N-SH_RA	brain:	n/a	n/a
5	RAD21	chr9:107950962-107951438	MCF-7	breast:	n/a	n/a
6	RAD21	chr9:107951023-107951327	GM12878	blood:	n/a	n/a
7	RAD21	chr9:107950984-107951372	HepG2	liver:	n/a	n/a
8	RAD21	chr9:107951016-107951421	MCF-7	breast:	n/a	n/a
9	CTCF	chr9:107951010-107951357	T-47D	breast:	n/a	n/a
10	CTCF	chr9:107951080-107951230	GM12865	blood:	n/a	n/a
11	CTCF	chr9:107951040-107951190	GM12801	blood:	n/a	n/a
12	SMC3	chr9:107951068-107951365	GM12878	blood:	n/a	n/a
13	CTCF	chr9:107951040-107951190	GM12873	blood:	n/a	n/a
14	CTCF	chr9:107951059-107951302	HepG2	liver:	n/a	n/a
15	CTCF	chr9:107951000-107951150	GM12868	blood:	n/a	n/a
16	RAD21	chr9:107951010-107951336	SK-N-SH_RA	brain:	n/a	n/a
17	YY1	chr9:107951059-107951391	GM12878	blood:	n/a	n/a
18	CTCF	chr9:107951080-107951230	GM12867	blood:	n/a	n/a
19	RAD21	chr9:107951065-107951365	GM12878	blood:	n/a	n/a
20	CTCF	chr9:107951014-107951364	GM12878	blood:	n/a	n/a
21	SMC3	chr9:107951074-107951333	Hela-S3	cervix:	n/a	n/a
22	CTCF	chr9:107951050-107951424	MCF-7	breast:	n/a	n/a
23	RAD21	chr9:107950960-107951382	ECC-1	luminal epithelium:	n/a	n/a
24	RAD21	chr9:107950990-107951400	HCT-116	colon:	n/a	n/a
25	RAD21	chr9:107951080-107951299	GM12878	blood:	n/a	n/a
26	RAD21	chr9:107950995-107951412	H1-hESC	embryonic stem cell:	n/a	n/a
27	RAD21	chr9:107951063-107951334	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:107950713..107951349-chr9:108177451..108178322,2	MCF-7	breast:
2	chr9:107949926..107956747-chr9:108004908..108009966,10	MCF-7	breast:
3	chr9:107948857..107951560-chr9:108005097..108008240,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000238208	TF binding region
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1045079	chr9:107938039-107975595	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1043466	chr9:107950174-108001988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107949000-107951200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:107949600-107951400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:107949600-107958200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:107949800-107951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:107949800-107951200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:107949800-107952400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:107950000-107951200	Enhancers	Hela-S3	cervix
8	chr9:107950200-107951400	Enhancers	Stomach Mucosa	stomach
9	chr9:107950200-107951600	Enhancers	A549	lung
10	chr9:107950400-107952800	Weak transcription	HepG2	liver
11	chr9:107950600-107953800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:107950800-107951200	Weak transcription	Liver	Liver
13	chr9:107950800-107953800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:107950800-107953800	Weak transcription	Osteobl	bone
15	chr9:107951000-107953600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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