Variant report

Variant	rs559347300
Chromosome Location	chr1:192675950-192675951
allele	-/TGTGTGTGTGTGTGTGTGTGTGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv3321003	chr1:192674884-192683739	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3321001	chr1:192674886-192683763	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321002	chr1:192674954-192683702	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3321004	chr1:192674954-192683702	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv18975	chr1:192675218-192683546	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1222979	chr1:192675934-192675950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192670200-192676200	Enhancers	HepG2	liver
2	chr1:192671400-192677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:192671400-192677200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:192671600-192676600	Weak transcription	Stomach Mucosa	stomach
5	chr1:192671600-192676800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:192671800-192677200	Weak transcription	NHEK	skin
7	chr1:192671800-192678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:192672400-192678000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:192672800-192677800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:192673200-192678600	Weak transcription	NH-A	brain
11	chr1:192674400-192677200	Weak transcription	A549	lung
12	chr1:192674800-192676600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:192675200-192676800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:192675600-192676000	Enhancers	Colon Smooth Muscle	Colon
15	chr1:192675600-192677600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:192675800-192676000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:192675800-192676000	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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