Variant report

Variant	rs55935768
Chromosome Location	chr6:25346796-25346797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25345654..25347781-chr6:25351220..25353584,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12665780	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28713764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28744391	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691071	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55708418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56004173	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56084108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146948	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73383409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73383427	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv601168	chr6:25346334-25393306	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25332000-25346800	Weak transcription	Ovary	ovary
2	chr6:25335200-25359800	Weak transcription	Thymus	Thymus
3	chr6:25336800-25350200	Weak transcription	Lung	lung
4	chr6:25336800-25354600	Weak transcription	Right Atrium	heart
5	chr6:25337400-25357800	Weak transcription	NHEK	skin
6	chr6:25340000-25349400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:25341000-25352800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:25341000-25359400	Weak transcription	Pancreas	Pancrea
9	chr6:25342400-25350600	Weak transcription	HSMMtube	muscle
10	chr6:25342800-25351800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:25342800-25354400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:25343000-25352600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:25343600-25348200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:25343800-25350600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:25343800-25354000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:25344000-25350600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:25344200-25349400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:25345400-25349200	Weak transcription	Aorta	Aorta
19	chr6:25346000-25347000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:25346000-25347200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:25346200-25346800	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:25346200-25346800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:25346200-25346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:25346200-25346800	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:25346200-25346800	Enhancers	Small Intestine	intestine
26	chr6:25346200-25347000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:25346200-25347000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:25346200-25347000	Enhancers	Fetal Lung	lung
29	chr6:25346200-25347200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:25346200-25347400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr6:25346200-25347600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:25346400-25346800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr6:25346400-25346800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:25346400-25346800	Enhancers	Primary hematopoietic stem cells	blood
35	chr6:25346400-25346800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:25346400-25346800	Enhancers	Fetal Intestine Small	intestine
37	chr6:25346400-25347000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:25346400-25347000	Enhancers	Stomach Mucosa	stomach
39	chr6:25346400-25347600	Enhancers	Brain Germinal Matrix	brain
40	chr6:25346600-25346800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:25346600-25346800	Weak transcription	Left Ventricle	heart
42	chr6:25346600-25347600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:25346600-25349400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:25346600-25349400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:25346600-25350400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:25346600-25359400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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