Variant report

Variant rs55936310
Chromosome Location chr19:28266742-28266743
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:28246600-28272000 ZNF genes & repeats Fetal Brain Female brain
2 chr19:28258800-28272000 ZNF genes & repeats Brain Germinal Matrix brain
3 chr19:28261000-28269200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr19:28261600-28283400 Weak transcription Psoas Muscle Psoas
5 chr19:28262200-28271800 ZNF genes & repeats Aorta Aorta
6 chr19:28263000-28266800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
7 chr19:28263000-28267600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr19:28263000-28267800 Strong transcription Skeletal Muscle Female skeletal muscle
9 chr19:28263000-28269800 Strong transcription HSMMtube muscle
10 chr19:28263200-28268400 ZNF genes & repeats Primary hematopoietic stem cells blood
11 chr19:28263200-28268400 ZNF genes & repeats Pancreas Pancrea
12 chr19:28263400-28268400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr19:28263400-28268400 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
14 chr19:28263400-28268600 ZNF genes & repeats Duodenum Mucosa Duodenum
15 chr19:28263400-28269000 ZNF genes & repeats Liver Liver
16 chr19:28263600-28267800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
17 chr19:28263600-28268600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr19:28263600-28268800 ZNF genes & repeats Fetal Brain Male brain
19 chr19:28263600-28272000 ZNF genes & repeats Fetal Lung lung
20 chr19:28263800-28266800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr19:28263800-28266800 ZNF genes & repeats Dnd41 blood
22 chr19:28263800-28270400 ZNF genes & repeats A549 lung
23 chr19:28264000-28267000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr19:28264000-28267200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
25 chr19:28264000-28270400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr19:28264200-28272200 ZNF genes & repeats Fetal Stomach stomach
27 chr19:28264400-28266800 Strong transcription Brain Cingulate Gyrus brain
28 chr19:28264600-28269800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
29 chr19:28264800-28268200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr19:28264800-28268200 Strong transcription Skeletal Muscle Male skeletal muscle
31 chr19:28264800-28269000 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr19:28264800-28269400 Weak transcription Brain Anterior Caudate brain
33 chr19:28264800-28281600 Weak transcription Muscle Satellite Cultured Cells --
34 chr19:28264800-28283600 Weak transcription Brain Substantia Nigra brain
35 chr19:28264800-28283800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr19:28265000-28267600 Weak transcription Stomach Smooth Muscle stomach
37 chr19:28265000-28268000 Weak transcription NH-A brain
38 chr19:28265000-28268200 Weak transcription Adipose Nuclei Adipose
39 chr19:28265000-28270000 Weak transcription Fetal Heart heart
40 chr19:28265000-28270200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr19:28265000-28271800 Weak transcription Right Ventricle heart
42 chr19:28265000-28272600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr19:28265000-28272600 Weak transcription Brain Angular Gyrus brain
44 chr19:28265000-28283400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr19:28265200-28267800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr19:28265200-28276600 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr19:28265200-28281600 Weak transcription HMEC breast
48 chr19:28265200-28283200 Weak transcription Brain Inferior Temporal Lobe brain
49 chr19:28265200-28283600 Weak transcription Brain Hippocampus Middle brain
50 chr19:28265600-28268000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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