Variant report

Variant	rs55936399
Chromosome Location	chr15:74118724-74118725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11633467	0.98[EUR][1000 genomes]
rs1377063	0.86[EUR][1000 genomes]
rs1584738	0.98[EUR][1000 genomes]
rs1901569	0.96[EUR][1000 genomes]
rs1901570	0.98[EUR][1000 genomes]
rs2167648	0.98[EUR][1000 genomes]
rs4145873	0.98[EUR][1000 genomes]
rs4145874	0.98[EUR][1000 genomes]
rs4886421	0.98[EUR][1000 genomes]
rs4886660	0.98[EUR][1000 genomes]
rs4886663	0.98[EUR][1000 genomes]
rs4886664	0.98[EUR][1000 genomes]
rs55715328	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55754412	0.81[EUR][1000 genomes]
rs56039716	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56186151	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56317092	0.85[EUR][1000 genomes]
rs73432310	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74111000-74119200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74118400-74120000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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