Variant report

Variant	rs559364564
Chromosome Location	chr1:94970922-94970923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94965266..94968110-chr1:94970843..94972625,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv947290	chr1:94970084-94984156	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
2	chr1:94914800-94985800	Weak transcription	NHLF	lung
3	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
4	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
5	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
6	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94916200-94974200	Weak transcription	Lung	lung
8	chr1:94917800-94971800	Weak transcription	NHEK	skin
9	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
11	chr1:94929400-94980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:94929600-94985400	Weak transcription	Fetal Brain Female	brain
13	chr1:94930800-94974000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:94937600-94971800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:94942400-94997200	Weak transcription	Right Ventricle	heart
16	chr1:94946400-94993000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:94952800-94987800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:94952800-94993000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:94952800-94993400	Weak transcription	Brain Substantia Nigra	brain
20	chr1:94953200-94971600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:94956200-95004000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:94956600-94987200	Weak transcription	Fetal Heart	heart
23	chr1:94958000-94985400	Weak transcription	Fetal Brain Male	brain
24	chr1:94958200-94971200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:94958400-94972800	Weak transcription	Brain Germinal Matrix	brain
26	chr1:94958400-94982600	Weak transcription	HMEC	breast
27	chr1:94958400-94992200	Weak transcription	NHDF-Ad	bronchial
28	chr1:94958400-94993200	Weak transcription	NH-A	brain
29	chr1:94958600-94976800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:94958600-94987600	Weak transcription	Primary B cells from cord blood	blood
31	chr1:94958600-95004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:94960600-94973800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:94962000-94988000	Weak transcription	HUVEC	blood vessel
34	chr1:94963200-94972200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:94963200-94972400	Strong transcription	Liver	Liver
36	chr1:94963800-94972200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:94963800-94972400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:94963800-94972400	Strong transcription	Primary T cells from cord blood	blood
39	chr1:94964000-94972200	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:94964000-94972400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:94964000-94972400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr1:94964000-94972400	Strong transcription	Dnd41	blood
43	chr1:94964200-94972400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:94964200-94972400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr1:94964400-94971000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:94964400-94972400	Strong transcription	Fetal Intestine Large	intestine
47	chr1:94965000-94975200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:94965200-94971800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:94965400-94987800	Weak transcription	GM12878-XiMat	blood
50	chr1:94965400-94995800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links