Variant report

Variant	rs559374449
Chromosome Location	chr12:11906470-11906471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11800154..11802196-chr12:11905804..11907326,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv1053609	chr12:11898099-11933906	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv976578	chr12:11906375-11907311	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11873200-11909400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:11885800-11911600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr12:11893200-11915000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:11894600-11908400	Weak transcription	Psoas Muscle	Psoas
5	chr12:11894800-11906600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:11895000-11906800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:11895000-11912600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:11895400-11914400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:11895600-11908800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:11897000-11908800	Weak transcription	Brain Anterior Caudate	brain
11	chr12:11899400-11908000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:11899400-11908200	Weak transcription	HSMMtube	muscle
13	chr12:11899400-11908400	Weak transcription	HSMM	muscle
14	chr12:11899600-11906800	Weak transcription	NH-A	brain
15	chr12:11900000-11907000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr12:11900400-11910600	Weak transcription	Colonic Mucosa	Colon
17	chr12:11900600-11915000	Weak transcription	NHEK	skin
18	chr12:11901200-11906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:11901400-11911000	Weak transcription	Fetal Lung	lung
20	chr12:11901800-11906600	Weak transcription	HUVEC	blood vessel
21	chr12:11902800-11910600	Weak transcription	Brain Angular Gyrus	brain
22	chr12:11902800-11910600	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:11902800-11910600	Weak transcription	Brain Substantia Nigra	brain
24	chr12:11903200-11910200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:11903400-11906600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr12:11903400-11910400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:11904000-11907000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:11904000-11908600	Genic enhancers	Fetal Thymus	thymus
29	chr12:11904000-11918000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:11904200-11906600	Enhancers	H9 Cell Line	embryonic stem cell
31	chr12:11904200-11906800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr12:11904200-11906800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr12:11904200-11907000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr12:11904200-11907000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:11904200-11913000	Strong transcription	Dnd41	blood
36	chr12:11904400-11906600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr12:11904400-11910600	Genic enhancers	GM12878-XiMat	blood
38	chr12:11904800-11906600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr12:11905000-11906800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr12:11905200-11906800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr12:11905200-11906800	Genic enhancers	Fetal Muscle Trunk	muscle
42	chr12:11905200-11907200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr12:11905200-11907200	Strong transcription	Fetal Intestine Small	intestine
44	chr12:11905200-11907200	Genic enhancers	Placenta	Placenta
45	chr12:11905200-11907200	Genic enhancers	Left Ventricle	heart
46	chr12:11905200-11908000	Weak transcription	Small Intestine	intestine
47	chr12:11905200-11908000	Genic enhancers	Thymus	Thymus
48	chr12:11905200-11908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr12:11905200-11908600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr12:11905200-11908600	Strong transcription	Fetal Intestine Large	intestine

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