The 2.0 version of rSNPBase

Variant report

Variant rs55938990
Chromosome Location chr18:44421145-44421146
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:44381400-44433000 Weak transcription Gastric stomach
2 chr18:44382200-44437000 Weak transcription Right Ventricle heart
3 chr18:44391000-44432400 Weak transcription Fetal Stomach stomach
4 chr18:44391800-44448400 Weak transcription Pancreas Pancrea
5 chr18:44392600-44431400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr18:44392600-44447800 Weak transcription Esophagus oesophagus
7 chr18:44393200-44433800 Weak transcription Colonic Mucosa Colon
8 chr18:44394400-44434000 Weak transcription Fetal Kidney kidney
9 chr18:44394800-44437800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr18:44397000-44441200 Weak transcription Hela-S3 cervix
11 chr18:44398600-44422400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr18:44399200-44434000 Weak transcription Fetal Brain Female brain
13 chr18:44399200-44457000 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr18:44399600-44434400 Weak transcription Fetal Intestine Small intestine
15 chr18:44399600-44437600 Weak transcription Small Intestine intestine
16 chr18:44400000-44448200 Weak transcription Spleen Spleen
17 chr18:44401200-44432200 Weak transcription Fetal Intestine Large intestine
18 chr18:44401400-44436600 Weak transcription Psoas Muscle Psoas
19 chr18:44401400-44437600 Weak transcription HMEC breast
20 chr18:44402000-44440800 Weak transcription A549 lung
21 chr18:44404000-44448000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr18:44404800-44424400 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr18:44405400-44443400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr18:44406000-44424200 Weak transcription Rectal Smooth Muscle rectum
25 chr18:44406000-44447200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr18:44406400-44422600 Weak transcription Placenta Placenta
27 chr18:44406800-44433600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr18:44407400-44447800 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr18:44407600-44431400 Weak transcription Brain Anterior Caudate brain
30 chr18:44407600-44453200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr18:44408000-44431200 Weak transcription Brain Hippocampus Middle brain
32 chr18:44408000-44433800 Weak transcription NH-A brain
33 chr18:44408000-44438000 Weak transcription Colon Smooth Muscle Colon
34 chr18:44408200-44436800 Weak transcription Brain Germinal Matrix brain
35 chr18:44408400-44422600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr18:44408400-44425200 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr18:44408400-44432200 Weak transcription Fetal Thymus thymus
38 chr18:44408400-44432400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr18:44408400-44432400 Weak transcription Stomach Smooth Muscle stomach
40 chr18:44408400-44433800 Weak transcription Osteobl bone
41 chr18:44408600-44422600 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr18:44408600-44431400 Weak transcription Aorta Aorta
43 chr18:44408600-44436800 Weak transcription NHLF lung
44 chr18:44408600-44448200 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr18:44408800-44430600 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr18:44408800-44431000 Weak transcription Fetal Muscle Trunk muscle
47 chr18:44408800-44432400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr18:44408800-44433800 Weak transcription H1 Cell Line embryonic stem cell
49 chr18:44408800-44448200 Weak transcription Lung lung
50 chr18:44409200-44423400 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015