Variant report

Variant	rs559396092
Chromosome Location	chr9:8752844-8752845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8750000-8760000	Weak transcription	Aorta	Aorta
2	chr9:8750400-8753000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:8750400-8753000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:8750400-8753200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:8750400-8753600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:8750600-8753400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:8751000-8757800	Weak transcription	Fetal Brain Male	brain
8	chr9:8751200-8758000	Weak transcription	Brain Substantia Nigra	brain
9	chr9:8751200-8764400	Weak transcription	Fetal Stomach	stomach
10	chr9:8751400-8754800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:8752200-8754400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:8752200-8755800	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8752200-8757800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:8752200-8759800	Weak transcription	Brain Anterior Caudate	brain
15	chr9:8752200-8760600	Weak transcription	Brain Angular Gyrus	brain
16	chr9:8752200-8760800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:8752800-8756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:8752800-8756000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:8752800-8756200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:8752800-8758000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:8752800-8758000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:8752800-8760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:8752800-8769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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