Variant report

Variant	rs559410754
Chromosome Location	chr4:20724926-20724927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20701205..20703695-chr4:20723209..20725454,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163138	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869522	chr4:20724433-20938248	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20703000-20741400	Weak transcription	Stomach Mucosa	stomach
2	chr4:20703200-20741000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:20706800-20738600	Weak transcription	Psoas Muscle	Psoas
4	chr4:20707200-20739400	Weak transcription	HepG2	liver
5	chr4:20708200-20733600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:20715400-20738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:20715400-20739400	Weak transcription	Osteobl	bone
8	chr4:20718000-20738600	Weak transcription	NHDF-Ad	bronchial
9	chr4:20718200-20738400	Weak transcription	Fetal Heart	heart
10	chr4:20721600-20727600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:20721800-20725200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:20721800-20725600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:20721800-20736000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:20721800-20736400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:20721800-20737200	Strong transcription	Liver	Liver
16	chr4:20722000-20725000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:20722000-20725000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr4:20722000-20725200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr4:20722000-20725400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:20722000-20725600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr4:20722000-20726000	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr4:20722000-20727000	Strong transcription	Brain Cingulate Gyrus	brain
23	chr4:20722000-20727800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:20722200-20725400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:20722200-20727600	Strong transcription	Brain Hippocampus Middle	brain
26	chr4:20722800-20725000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:20722800-20725000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:20722800-20725000	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:20722800-20725200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:20722800-20735800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:20723000-20726000	Strong transcription	Right Ventricle	heart
32	chr4:20723000-20738400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:20723200-20727200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:20723600-20727200	Strong transcription	Brain Angular Gyrus	brain
35	chr4:20723600-20727200	Strong transcription	Fetal Lung	lung
36	chr4:20723800-20726200	Strong transcription	Colonic Mucosa	Colon
37	chr4:20724000-20725000	ZNF genes & repeats	Colon Smooth Muscle	Colon
38	chr4:20724000-20725000	Strong transcription	A549	lung
39	chr4:20724000-20725200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
40	chr4:20724000-20725400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:20724000-20726000	Strong transcription	Primary B cells from cord blood	blood
42	chr4:20724200-20725600	Strong transcription	Brain Anterior Caudate	brain
43	chr4:20724200-20726200	Strong transcription	Placenta	Placenta
44	chr4:20724200-20727800	Strong transcription	HUVEC	blood vessel
45	chr4:20724200-20730200	Strong transcription	Left Ventricle	heart
46	chr4:20724200-20736000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:20724200-20736000	Strong transcription	Adipose Nuclei	Adipose
48	chr4:20724200-20737000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr4:20724200-20738800	Weak transcription	Gastric	stomach
50	chr4:20724200-20738800	Weak transcription	Small Intestine	intestine

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