Variant report

Variant	rs55941742
Chromosome Location	chr4:84977350-84977351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12499536	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66718461	0.97[EUR][1000 genomes]
rs6853746	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84973600-84979000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:84973800-84979000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:84973800-84979200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:84973800-84979200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:84973800-84979200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:84973800-84979200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:84973800-84979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:84973800-84979200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:84973800-84980200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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