Variant report

Variant	rs55942230
Chromosome Location	chr3:140765016-140765017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2311493	1.00[AMR][1000 genomes]
rs73868969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73868970	0.91[AFR][1000 genomes]
rs73868983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3463549	chr3:140760163-140765306	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3463550	chr3:140760337-140765199	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140764000-140765200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:140764000-140765400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:140764000-140766000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:140764400-140765200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:140764600-140765200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:140764800-140765200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:140764800-140769400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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