Variant report

Variant	rs55944057
Chromosome Location	chr10:21838810-21838811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21836999..21839555-chr10:21840318..21842760,2	MCF-7	breast:
2	chr10:21836408..21839153-chr10:21840601..21843518,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56251923	1.00[AFR][1000 genomes]
rs74120974	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21842600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:21824600-21930400	Weak transcription	Gastric	stomach
4	chr10:21824800-21839200	Weak transcription	Hela-S3	cervix
5	chr10:21824800-21841800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:21824800-21852200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:21824800-21852200	Strong transcription	Fetal Intestine Small	intestine
8	chr10:21824800-21860200	Weak transcription	Psoas Muscle	Psoas
9	chr10:21825000-21844200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:21825000-21850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:21825200-21850600	Strong transcription	Fetal Stomach	stomach
12	chr10:21825200-21854800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:21825400-21839000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:21825400-21839200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:21825600-21842200	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:21825600-21849800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:21825600-21850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:21825600-21857800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:21825800-21844400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:21825800-21856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:21826200-21844200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:21826200-21850600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:21826800-21839400	Strong transcription	Liver	Liver
24	chr10:21826800-21844800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:21827200-21842600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:21827800-21839400	Strong transcription	Fetal Lung	lung
27	chr10:21827800-21842200	Strong transcription	Osteobl	bone
28	chr10:21827800-21850800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:21828000-21839000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:21828000-21851200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:21828000-21856600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:21828400-21839600	Strong transcription	Lung	lung
33	chr10:21828400-21845200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:21831800-21839400	Weak transcription	Right Ventricle	heart
35	chr10:21832000-21856400	Weak transcription	Colonic Mucosa	Colon
36	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
37	chr10:21832200-21848000	Weak transcription	Esophagus	oesophagus
38	chr10:21832800-21856200	Weak transcription	Pancreas	Pancrea
39	chr10:21833200-21840400	Weak transcription	HSMMtube	muscle
40	chr10:21833400-21839000	Weak transcription	Brain Substantia Nigra	brain
41	chr10:21833400-21840800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:21833400-21841800	Weak transcription	Fetal Brain Male	brain
43	chr10:21833400-21851200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:21833400-21856200	Weak transcription	Small Intestine	intestine
45	chr10:21833400-21856400	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:21833600-21848000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:21833800-21841000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:21834000-21839000	Weak transcription	Fetal Kidney	kidney
49	chr10:21834400-21840800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:21834400-21847800	Weak transcription	Brain Angular Gyrus	brain

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