Variant report

Variant	rs55945362
Chromosome Location	chr2:30942460-30942461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17010108	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2593435	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2609914	0.82[ASN][1000 genomes]
rs2681678	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61259586	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72865490	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72867117	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72867120	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7566361	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7569322	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30938400-30946000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:30940000-30944000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:30940400-30944600	Weak transcription	Pancreas	Pancrea
5	chr2:30940600-30969600	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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