Variant report

Variant	rs559466199
Chromosome Location	chr7:69138248-69138249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1034380	chr7:69137914-69171449	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69125000-69142000	Weak transcription	Fetal Stomach	stomach
2	chr7:69125000-69142400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:69129000-69139800	Weak transcription	Fetal Lung	lung
4	chr7:69135200-69138600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:69135400-69139000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:69135400-69141600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:69135400-69142800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:69135600-69139200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:69135800-69138400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:69135800-69139800	Weak transcription	Fetal Thymus	thymus
11	chr7:69135800-69141400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:69136000-69139000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:69136000-69139800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:69136000-69140600	Weak transcription	Psoas Muscle	Psoas
15	chr7:69136200-69139000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:69136400-69138400	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:69136400-69142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:69136600-69139200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:69136800-69139800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:69136800-69142200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:69137200-69140200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr7:69137400-69138600	Enhancers	Fetal Brain Male	brain
23	chr7:69137600-69138600	Enhancers	Aorta	Aorta
24	chr7:69137600-69138600	Enhancers	Ovary	ovary
25	chr7:69137600-69138600	Enhancers	Right Ventricle	heart
26	chr7:69137600-69138800	Enhancers	Fetal Brain Female	brain
27	chr7:69137600-69139400	Enhancers	Brain Germinal Matrix	brain
28	chr7:69137600-69139800	Enhancers	GM12878-XiMat	blood
29	chr7:69137600-69140200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:69137800-69138400	Enhancers	Rectal Smooth Muscle	rectum
31	chr7:69137800-69139000	Weak transcription	Placenta	Placenta
32	chr7:69137800-69140200	Enhancers	Adipose Nuclei	Adipose
33	chr7:69138000-69138400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:69138000-69138600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:69138000-69138600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:69138000-69138600	Enhancers	Brain Hippocampus Middle	brain
37	chr7:69138000-69139200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:69138000-69140200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:69138000-69140200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr7:69138000-69143200	Weak transcription	Left Ventricle	heart
41	chr7:69138200-69138600	Enhancers	Right Atrium	heart
42	chr7:69138200-69138800	Enhancers	Stomach Smooth Muscle	stomach
43	chr7:69138200-69140000	Enhancers	Brain Anterior Caudate	brain
44	chr7:69138200-69140200	Enhancers	Brain Substantia Nigra	brain

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