Variant report

Variant	rs55946993
Chromosome Location	chr7:128210687-128210688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1848097	chr7:128179503-128248497	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1810084	chr7:128201902-128248697	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1829966	chr7:128201902-128248697	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1847512	chr7:128201902-128248697	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3478067	chr7:128209147-128216052	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3478068	chr7:128209147-128216052	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv966884	chr7:128210294-128212815	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128172600-128210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:128172600-128214800	Weak transcription	Gastric	stomach
3	chr7:128172800-128239800	Weak transcription	Small Intestine	intestine
4	chr7:128173000-128231800	Weak transcription	Colonic Mucosa	Colon
5	chr7:128173000-128231800	Weak transcription	Fetal Kidney	kidney
6	chr7:128173600-128214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:128173800-128214800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:128173800-128234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:128174000-128220600	Weak transcription	NHLF	lung
10	chr7:128174000-128231800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:128174000-128232600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:128175400-128231800	Weak transcription	Left Ventricle	heart
13	chr7:128176000-128214800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:128177600-128231800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:128179200-128231800	Weak transcription	Esophagus	oesophagus
16	chr7:128181800-128231800	Weak transcription	Aorta	Aorta
17	chr7:128183000-128214200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:128183400-128214800	Weak transcription	HUVEC	blood vessel
19	chr7:128183600-128214800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:128187400-128212400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:128187400-128214800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:128187400-128214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:128187600-128213800	Weak transcription	Osteobl	bone
24	chr7:128187600-128214400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:128187600-128232000	Weak transcription	NH-A	brain
26	chr7:128187800-128214800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:128188000-128210800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:128188000-128213800	Weak transcription	Brain Anterior Caudate	brain
29	chr7:128188000-128213800	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:128188000-128214800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:128188000-128214800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:128188000-128215000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:128188000-128215000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:128188000-128220800	Weak transcription	NHEK	skin
35	chr7:128188000-128232800	Weak transcription	Fetal Brain Female	brain
36	chr7:128188200-128215000	Weak transcription	Hela-S3	cervix
37	chr7:128188200-128229800	Weak transcription	HSMM	muscle
38	chr7:128188400-128212400	Weak transcription	Lung	lung
39	chr7:128188400-128214800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr7:128188400-128230800	Weak transcription	Primary T cells from cord blood	blood
41	chr7:128188400-128231200	Weak transcription	Pancreas	Pancrea
42	chr7:128188600-128213800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:128188800-128231800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:128189200-128220400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:128190600-128220400	Weak transcription	NHDF-Ad	bronchial
46	chr7:128191200-128226000	Weak transcription	Ovary	ovary
47	chr7:128191400-128220600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:128191400-128232000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:128191600-128215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:128191800-128213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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