Variant report

Variant	rs55947174
Chromosome Location	chr9:18912079-18912080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18908849..18913182-chr9:18913314..18916525,3	K562	blood:
2	chr9:18906548..18908118-chr9:18909861..18912820,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10963840	0.91[ASN][1000 genomes]
rs12348311	0.91[ASN][1000 genomes]
rs12553204	0.91[ASN][1000 genomes]
rs58840278	1.00[ASN][1000 genomes]
rs73425288	1.00[ASN][1000 genomes]
rs73427203	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18897400-18920400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:18907800-18912400	Strong transcription	HSMM	muscle
3	chr9:18908000-18912600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18908000-18919400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:18909800-18913200	Enhancers	Fetal Thymus	thymus
6	chr9:18909800-18924400	Weak transcription	Aorta	Aorta
7	chr9:18910600-18912400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:18910800-18912400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr9:18910800-18912400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:18911000-18912200	Strong transcription	Osteobl	bone
11	chr9:18911000-18912400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:18911000-18912600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:18911000-18922200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:18911200-18912400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:18911200-18912400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:18911400-18912200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:18911400-18912400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:18911400-18912400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:18911400-18912400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:18911400-18912600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:18911400-18915000	Weak transcription	NHDF-Ad	bronchial
22	chr9:18911400-18919800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:18911600-18912400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:18911800-18912400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr9:18911800-18912400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr9:18912000-18912400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:18912000-18914000	Weak transcription	Fetal Lung	lung
28	chr9:18912000-18914000	Weak transcription	Fetal Stomach	stomach
29	chr9:18912000-18914200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:18912000-18922200	Weak transcription	Fetal Muscle Trunk	muscle

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