Variant report

Variant	rs55947663
Chromosome Location	chr9:16188797-16188798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10114001	0.84[EUR][1000 genomes]
rs11999291	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12000929	0.86[EUR][1000 genomes]
rs28695497	0.83[EUR][1000 genomes]
rs4961665	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56222853	0.83[EUR][1000 genomes]
rs7850515	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7852086	0.83[EUR][1000 genomes]
rs9407717	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs950199	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16179800-16192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16185000-16189200	Weak transcription	Primary T cells from cord blood	blood
3	chr9:16185200-16193600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:16185600-16192200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:16185600-16196400	Weak transcription	Aorta	Aorta
6	chr9:16187800-16191400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16188200-16189000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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