Variant report

Variant	rs55949409
Chromosome Location	chr6:141641632-141641633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1037442	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754010	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11754251	0.85[EUR][1000 genomes]
rs11755650	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11965196	0.85[EUR][1000 genomes]
rs12173514	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1335302	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1335306	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1335308	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1377327	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1377328	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1377329	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452991	0.83[EUR][1000 genomes]
rs1530925	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767999	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17768047	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17829724	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1932191	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28455539	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3911276	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3966689	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4114765	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146326	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56412100	0.85[EUR][1000 genomes]
rs62429885	0.83[EUR][1000 genomes]
rs62430508	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62430509	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62430528	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916170	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6916409	0.85[EUR][1000 genomes]
rs6925481	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932051	0.84[EUR][1000 genomes]
rs6941096	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941145	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941306	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941722	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs718176	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs719196	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72976023	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72985124	0.84[EUR][1000 genomes]
rs72991092	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72992732	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7741796	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742222	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742882	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744875	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7746946	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753346	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7760560	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762315	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762366	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762818	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321801	0.85[EUR][1000 genomes]
rs9373298	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9376609	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9385942	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385948	0.82[EUR][1000 genomes]
rs9385949	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385955	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389884	0.83[EUR][1000 genomes]
rs9389887	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389888	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389889	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389890	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389901	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9389905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399363	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403253	0.85[EUR][1000 genomes]
rs9403261	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403263	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403264	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403279	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403284	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403288	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403297	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403298	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1028540	chr6:141121435-141740831	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv604780	chr6:141126080-141740918	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1033387	chr6:141130072-141742682	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030686	chr6:141130072-141749079	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1024981	chr6:141134064-141742682	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv916684	chr6:141149976-141682411	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv532071	chr6:141150099-141682503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1035133	chr6:141156919-141650334	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1029033	chr6:141156919-141740831	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv886720	chr6:141328865-141725335	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886721	chr6:141328865-141739208	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv886725	chr6:141428255-141718812	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv886726	chr6:141428255-141764919	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141635400-141648200	Weak transcription	Psoas Muscle	Psoas
2	chr6:141635600-141647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:141639000-141643000	Weak transcription	Ovary	ovary
4	chr6:141639400-141642600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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