Variant report

Variant	rs559499816
Chromosome Location	chr7:140207062-140207063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140199959..140203037-chr7:140204634..140207948,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv437576	chr7:140182985-140217670	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1033685	chr7:140197079-140224303	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1032716	chr7:140198540-140214067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1018535	chr7:140198540-140224303	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140205200-140208000	Enhancers	Fetal Muscle Leg	muscle
2	chr7:140205800-140225400	Weak transcription	Spleen	Spleen
3	chr7:140206000-140207200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:140206000-140207400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:140206000-140207400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:140206000-140207400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:140206000-140208800	Enhancers	Fetal Heart	heart
8	chr7:140206200-140207200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:140206200-140207200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:140206200-140207200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:140206200-140207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:140206200-140207200	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr7:140206200-140207200	Enhancers	HSMM	muscle
14	chr7:140206200-140207400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:140206200-140207400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:140206200-140207400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr7:140206200-140207400	Enhancers	Placenta	Placenta
18	chr7:140206200-140207400	Enhancers	Fetal Stomach	stomach
19	chr7:140206200-140207600	Enhancers	K562	blood
20	chr7:140206200-140207800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:140206200-140207800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:140206200-140207800	Enhancers	Fetal Muscle Trunk	muscle
23	chr7:140206200-140208000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:140206200-140208000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:140206200-140208000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr7:140206200-140208200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:140206200-140208200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:140206200-140208400	Enhancers	Duodenum Mucosa	Duodenum
29	chr7:140206200-140208400	Enhancers	Ovary	ovary
30	chr7:140206200-140208600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:140206200-140209000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:140206400-140207200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:140206400-140207200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:140206400-140207200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:140206400-140207200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:140206400-140207200	Enhancers	Fetal Intestine Small	intestine
37	chr7:140206400-140207200	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr7:140206400-140207200	Enhancers	NH-A	brain
39	chr7:140206400-140207400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr7:140206400-140207400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:140206400-140208000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr7:140206400-140208400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:140206400-140212200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr7:140206600-140207200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:140206600-140207200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:140206600-140207200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:140206600-140207200	Enhancers	Fetal Lung	lung
48	chr7:140206600-140207200	Enhancers	Pancreas	Pancrea
49	chr7:140206600-140207200	Enhancers	NHLF	lung
50	chr7:140206600-140207200	Enhancers	Osteobl	bone

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