Variant report

Variant	rs55950082
Chromosome Location	chr11:34877764-34877765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv275183	chr11:34877761-34881376	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34872200-34886600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34875400-34877800	Enhancers	Stomach Mucosa	stomach
4	chr11:34876200-34878200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34876200-34878200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:34876400-34878800	Weak transcription	Small Intestine	intestine
7	chr11:34876600-34896000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34876800-34880400	Weak transcription	Esophagus	oesophagus
9	chr11:34877000-34878000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:34877000-34880800	Weak transcription	HepG2	liver
11	chr11:34877200-34877800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr11:34877400-34878000	Weak transcription	Psoas Muscle	Psoas
13	chr11:34877400-34881000	Weak transcription	Left Ventricle	heart
14	chr11:34877400-34886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:34877600-34880000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:34877600-34881600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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