Variant report

Variant	rs559503457
Chromosome Location	chrX:77002961-77002962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531129	chrX:76703995-77038914	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3368873	chrX:76731246-77122844	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3399586	chrX:76799846-77022144	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3443309	chrX:76822346-77048294	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3369442	chrX:76969046-77309072	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv3394616	chrX:76981346-77048544	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3398050	chrX:77001746-77122444	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76986000-77011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:76995800-77007400	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:76996400-77004800	Weak transcription	A549	lung
4	chrX:76996400-77022800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chrX:76996400-77032000	Weak transcription	Hela-S3	cervix
6	chrX:76996600-77011400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:76998600-77011800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chrX:76999000-77003000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:76999400-77008000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:76999400-77011400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chrX:76999400-77011400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chrX:76999400-77024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chrX:76999800-77041000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chrX:77000000-77024200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chrX:77001200-77003600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chrX:77002400-77011600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chrX:77002800-77003000	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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