Variant report

Variant	rs55950479
Chromosome Location	chr3:68814236-68814237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10049352	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11920714	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11920741	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13075703	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1352638	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1354439	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1387731	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1489992	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1489993	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1489995	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1565386	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1580569	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1602199	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1602200	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1873263	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2130436	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2314317	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4484195	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4855521	0.82[EUR][1000 genomes]
rs62254116	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6549146	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6549147	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6764924	0.82[EUR][1000 genomes]
rs7621668	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7635448	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs876535	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9812027	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9818648	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9846042	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9858963	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs991807	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs991808	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68810200-68824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:68813200-68814400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:68813200-68814600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:68813200-68815200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:68813200-68815200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:68813600-68814400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:68813600-68814400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:68813600-68815000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:68814200-68818000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:68814200-68818200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:68814200-68818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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