Variant report

Variant	rs559535564
Chromosome Location	chr10:94212787-94212788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:94205200-94212800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:94205200-94214400	Weak transcription	Right Ventricle	heart
5	chr10:94205600-94214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:94205800-94214400	Weak transcription	Fetal Stomach	stomach
7	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:94206200-94214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:94206200-94214400	Weak transcription	K562	blood
10	chr10:94206400-94213200	Weak transcription	HUVEC	blood vessel
11	chr10:94206400-94214200	Weak transcription	Fetal Intestine Large	intestine
12	chr10:94206400-94214400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
14	chr10:94207000-94214400	Weak transcription	Gastric	stomach
15	chr10:94207200-94214400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:94207600-94213200	Weak transcription	Hela-S3	cervix
17	chr10:94207800-94213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:94207800-94214000	Weak transcription	Left Ventricle	heart
19	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:94208000-94213200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94208000-94214000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:94208000-94214200	Weak transcription	Fetal Lung	lung
23	chr10:94208000-94215600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:94208000-94219800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:94208000-94222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:94208000-94223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:94208000-94224000	Weak transcription	Fetal Kidney	kidney
28	chr10:94208200-94214400	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94208200-94216800	Weak transcription	Small Intestine	intestine
30	chr10:94208400-94219200	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
32	chr10:94208600-94213200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:94208600-94214200	Weak transcription	Spleen	Spleen
34	chr10:94208600-94217000	Weak transcription	NHEK	skin
35	chr10:94209000-94214400	Weak transcription	Pancreas	Pancrea
36	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94209200-94213400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:94209200-94214200	Weak transcription	Brain Angular Gyrus	brain
39	chr10:94209200-94214400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:94209200-94216600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:94209200-94217200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:94209400-94218600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:94209400-94225800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:94209800-94214200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:94209800-94214200	Weak transcription	Aorta	Aorta
47	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
48	chr10:94210000-94214000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:94210000-94214000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:94210000-94214200	Weak transcription	Thymus	Thymus

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