Variant report

Variant rs55954688
Chromosome Location chr1:228275257-228275258
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228271600-228278600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
2 chr1:228272000-228275400 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr1:228272000-228275800 Enhancers Spleen Spleen
4 chr1:228272200-228275400 Enhancers Primary B cells from peripheral blood blood
5 chr1:228272400-228279400 Genic enhancers Fetal Muscle Leg muscle
6 chr1:228272400-228280000 Genic enhancers Fetal Thymus thymus
7 chr1:228272400-228284400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:228272600-228275600 Enhancers Sigmoid Colon Sigmoid Colon
9 chr1:228272600-228278400 Enhancers Small Intestine intestine
10 chr1:228272600-228280200 Enhancers Fetal Heart heart
11 chr1:228272800-228275400 Enhancers Primary T helper naive cells fromperipheralblood blood
12 chr1:228272800-228275400 Enhancers Brain Inferior Temporal Lobe brain
13 chr1:228272800-228278600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:228272800-228278600 Genic enhancers Fetal Stomach stomach
15 chr1:228273000-228275600 Enhancers Primary T cells fromperipheralblood blood
16 chr1:228273000-228275600 Enhancers Brain Hippocampus Middle brain
17 chr1:228273000-228275600 Enhancers Fetal Adrenal Gland Adrenal Gland
18 chr1:228273000-228275800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:228273000-228276000 Enhancers Placenta Placenta
20 chr1:228273000-228277400 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:228273000-228279200 Genic enhancers Fetal Intestine Small intestine
22 chr1:228273000-228284200 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr1:228273200-228275400 Enhancers Primary hematopoietic stem cells blood
24 chr1:228273200-228275400 Enhancers HMEC breast
25 chr1:228273200-228275600 Enhancers Thymus Thymus
26 chr1:228273200-228275800 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr1:228273200-228275800 Enhancers Primary T helper cells fromperipheralblood blood
28 chr1:228273200-228275800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:228273200-228276400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr1:228273200-228276400 Enhancers Stomach Mucosa stomach
31 chr1:228273400-228275400 Enhancers Primary B cells from cord blood blood
32 chr1:228273400-228275400 Enhancers Gastric stomach
33 chr1:228273400-228275400 Enhancers Ovary ovary
34 chr1:228273400-228275400 Enhancers NHLF lung
35 chr1:228273400-228275600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr1:228273400-228275600 Enhancers Pancreas Pancrea
37 chr1:228273400-228275800 Enhancers Lung lung
38 chr1:228273400-228275800 Enhancers Right Ventricle heart
39 chr1:228273400-228275800 Enhancers HSMMtube muscle
40 chr1:228273400-228276200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr1:228273400-228276400 Enhancers Brain Angular Gyrus brain
42 chr1:228273400-228276600 Weak transcription Brain Germinal Matrix brain
43 chr1:228273400-228277600 Enhancers Brain Cingulate Gyrus brain
44 chr1:228273400-228278200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:228273400-228279000 Genic enhancers HepG2 liver
46 chr1:228273400-228280200 Enhancers Primary monocytes fromperipheralblood blood
47 chr1:228273400-228285200 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:228273600-228275400 Enhancers Skeletal Muscle Female skeletal muscle
49 chr1:228273600-228275400 Genic enhancers Hela-S3 cervix
50 chr1:228273600-228275600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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