Variant report

Variant	rs559579789
Chromosome Location	chr16:71764158-71764159
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71761696..71764343-chr16:71777022..71779148,2	MCF-7	breast:
2	chr16:71762201..71765356-chr16:71767095..71769996,3	K562	blood:
3	chr16:71755440..71760927-chr16:71762234..71766346,5	K562	blood:
4	chr16:71755880..71759578-chr16:71759607..71764621,8	MCF-7	breast:
5	chr16:71763234..71765356-chr16:71767095..71769996,2	K562	blood:

Variant related genes	Relation type
ENSG00000040199	Chromatin interaction
ENSG00000261513	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000260612	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	esv1819402	chr16:71755852-71816899	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	n/a
5	nsv960025	chr16:71763047-71765882	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71758200-71765200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:71758200-71766200	Weak transcription	Gastric	stomach
3	chr16:71758400-71764200	Weak transcription	HSMM	muscle
4	chr16:71758400-71764200	Weak transcription	HSMMtube	muscle
5	chr16:71758400-71764200	Weak transcription	NH-A	brain
6	chr16:71758400-71764400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr16:71758400-71764400	Weak transcription	Brain Angular Gyrus	brain
8	chr16:71758400-71764400	Weak transcription	Brain Germinal Matrix	brain
9	chr16:71758400-71764400	Weak transcription	Left Ventricle	heart
10	chr16:71758400-71764800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr16:71758400-71765400	Weak transcription	Fetal Brain Female	brain
12	chr16:71758400-71765600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:71758400-71765600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr16:71758400-71765600	Weak transcription	Brain Substantia Nigra	brain
15	chr16:71758400-71765600	Weak transcription	Fetal Brain Male	brain
16	chr16:71758400-71765600	Weak transcription	Fetal Lung	lung
17	chr16:71758400-71765600	Weak transcription	Pancreas	Pancrea
18	chr16:71758400-71765600	Weak transcription	Spleen	Spleen
19	chr16:71758400-71765800	Weak transcription	Right Ventricle	heart
20	chr16:71758400-71766200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:71758400-71766200	Weak transcription	Psoas Muscle	Psoas
22	chr16:71758400-71766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr16:71758400-71766400	Weak transcription	Esophagus	oesophagus
24	chr16:71758400-71766400	Weak transcription	Right Atrium	heart
25	chr16:71758400-71771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:71758600-71764200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:71758600-71764200	Weak transcription	HMEC	breast
28	chr16:71758600-71764400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr16:71758600-71764400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr16:71758600-71764600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr16:71758600-71764600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr16:71758600-71764600	Weak transcription	HUVEC	blood vessel
33	chr16:71758600-71765400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr16:71758600-71765400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:71758600-71765600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr16:71758600-71765600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr16:71758600-71766200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr16:71758600-71767400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:71758600-71776800	Weak transcription	Fetal Heart	heart
40	chr16:71758800-71764200	Weak transcription	A549	lung
41	chr16:71758800-71764400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr16:71758800-71764400	Weak transcription	Fetal Kidney	kidney
43	chr16:71758800-71764400	Weak transcription	Dnd41	blood
44	chr16:71758800-71764600	Weak transcription	NHEK	skin
45	chr16:71758800-71765000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr16:71758800-71765600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr16:71758800-71765600	Weak transcription	Stomach Mucosa	stomach
48	chr16:71758800-71766200	Weak transcription	Hela-S3	cervix
49	chr16:71759600-71764400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr16:71760000-71765600	Weak transcription	H1 Cell Line	embryonic stem cell

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