Variant report

Variant	rs55958065
Chromosome Location	chr1:228478212-228478213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr1:228478121-228478594	K562	blood:	n/a	chr1:228478190-228478203
2	RAD21	chr1:228477895-228478316	K562	blood:	n/a	chr1:228478037-228478051
3	POLR2A	chr1:228478201-228478528	K562	blood:	n/a	n/a
4	GATA2	chr1:228478182-228478635	K562	blood:	n/a	chr1:228478614-228478625 chr1:228478391-228478408 chr1:228478390-228478399 chr1:228478390-228478397 chr1:228478390-228478397 chr1:228478389-228478399 chr1:228478390-228478397 chr1:228478383-228478404 chr1:228478388-228478400 chr1:228478390-228478399
5	ZBTB7A	chr1:228477890-228478505	K562	blood:	n/a	n/a
6	RCOR1	chr1:228477961-228478537	K562	blood:	n/a	n/a
7	CTCF	chr1:228478170-228478256	Lung_OC	lung:	n/a	chr1:228478202-228478212
8	CTCF	chr1:228478081-228478428	T-47D	breast:	n/a	chr1:228478202-228478212
9	YY1	chr1:228478118-228478611	K562	blood:	n/a	n/a
10	CTCF	chr1:228478145-228478333	K562	blood:	n/a	chr1:228478202-228478212
11	CTCF	chr1:228477911-228478393	K562	blood:	n/a	chr1:228478202-228478212
12	CBX3	chr1:228478137-228478644	K562	blood:	n/a	n/a
13	CTCF	chr1:228478120-228478270	Caco-2	colon:	n/a	chr1:228478202-228478212
14	NR2F2	chr1:228477725-228478738	K562	blood:	n/a	n/a
15	CTCF	chr1:228477836-228478418	K562	blood:	n/a	chr1:228478202-228478212
16	REST	chr1:228478179-228478552	K562	blood:	n/a	n/a
17	MAX	chr1:228477711-228478581	K562	blood:	n/a	chr1:228478441-228478450
18	STAT5A	chr1:228478076-228478642	K562	blood:	n/a	n/a
19	CCNT2	chr1:228478204-228478531	K562	blood:	n/a	chr1:228478388-228478408 chr1:228478324-228478344
20	TEAD4	chr1:228478116-228478637	K562	blood:	n/a	n/a
21	EGR1	chr1:228478168-228478502	K562	blood:	n/a	n/a
22	GATA1	chr1:228477855-228478749	K562	blood:	n/a	chr1:228478614-228478625 chr1:228478391-228478408 chr1:228478390-228478399 chr1:228478390-228478397 chr1:228478390-228478397 chr1:228478389-228478399 chr1:228478390-228478397 chr1:228478383-228478404 chr1:228478388-228478400 chr1:228478390-228478399
23	ELF1	chr1:228477857-228478543	K562	blood:	n/a	n/a
24	CEBPD	chr1:228478061-228478664	K562	blood:	n/a	n/a
25	GATA1	chr1:228478205-228478539	K562	blood:	n/a	chr1:228478391-228478408 chr1:228478390-228478399 chr1:228478390-228478397 chr1:228478390-228478397 chr1:228478389-228478399 chr1:228478390-228478397 chr1:228478383-228478404 chr1:228478388-228478400 chr1:228478390-228478399
26	CTCF	chr1:228478180-228478330	HepG2	liver:	n/a	chr1:228478202-228478212
27	CTCF	chr1:228478036-228478334	T-47D	breast:	n/a	chr1:228478202-228478212
28	TEAD4	chr1:228478100-228478625	K562	blood:	n/a	n/a
29	CEBPB	chr1:228478158-228478586	K562	blood:	n/a	n/a
30	CTCF	chr1:228477914-228478337	HepG2	liver:	n/a	chr1:228478202-228478212
31	POLR2A	chr1:228478169-228478548	K562	blood:	n/a	n/a
32	TAL1	chr1:228478143-228478616	K562	blood:	n/a	chr1:228478250-228478259 chr1:228478390-228478408
33	CEBPD	chr1:228478195-228478561	K562	blood:	n/a	n/a
34	POLR2A	chr1:228478134-228478578	K562	blood:	n/a	n/a
35	GABPA	chr1:228477791-228478619	K562	blood:	n/a	n/a
36	EP300	chr1:228478198-228478586	K562	blood:	n/a	chr1:228478534-228478550
37	ELF1	chr1:228478000-228478408	GM12878	blood:	n/a	n/a
38	POLR2A	chr1:228478189-228478516	K562	blood:	n/a	n/a
39	CTCF	chr1:228477866-228478411	K562	blood:	n/a	chr1:228478202-228478212
40	TRIM28	chr1:228478096-228478645	K562	blood:	n/a	n/a
41	TBL1XR1	chr1:228478198-228478488	K562	blood:	n/a	n/a
42	MAZ	chr1:228477989-228478481	K562	blood:	n/a	chr1:228478441-228478450
43	SMC3	chr1:228477907-228478235	K562	blood:	n/a	n/a
44	CTCF	chr1:228477729-228478481	K562	blood:	n/a	chr1:228478202-228478212
45	PML	chr1:228478155-228478617	K562	blood:	n/a	n/a
46	NR2F2	chr1:228478147-228478569	K562	blood:	n/a	n/a
47	UBTF	chr1:228478018-228478417	K562	blood:	n/a	n/a
48	GABPA	chr1:228478183-228478561	K562	blood:	n/a	n/a
49	STAT5A	chr1:228478167-228478579	K562	blood:	n/a	n/a
50	BHLHE40	chr1:228478177-228478579	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:228476724..228479773-chr1:228482640..228484624,3	K562	blood:
2	chr1:228478007..228479882-chr1:228496613..228498200,2	K562	blood:
3	chr1:228290994..228293117-chr1:228477432..228479388,2	K562	blood:
4	chr1:228468187..228470207-chr1:228477251..228479949,2	K562	blood:
5	chr1:228477373..228479418-chr1:228539511..228541248,2	K562	blood:
6	chr1:228477052..228479311-chr1:228554955..228557444,2	K562	blood:

Variant related genes	Relation type
OBSCN	TF binding region
ENSG00000143793	Chromatin interaction
ENSG00000154358	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56207416	0.85[AFR][1000 genomes]
rs59544868	0.85[AFR][1000 genomes]
rs60676928	0.85[AFR][1000 genomes]
rs61054500	0.83[AFR][1000 genomes]
rs61547582	0.83[AFR][1000 genomes]
rs74142693	0.85[AFR][1000 genomes]
rs7511924	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv826908	chr1:227895386-228691100	Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
3	nsv523935	chr1:228038124-228681749	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv873253	chr1:228231601-228537942	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv873254	chr1:228231601-228543800	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv873255	chr1:228254753-228684779	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	133 gene(s)	inside rSNPs	diseases
7	nsv827019	chr1:228314167-228651020	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
8	nsv1012078	chr1:228340876-228521843	Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
9	nsv535320	chr1:228340876-228521843	Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
10	nsv873263	chr1:228391808-228494790	Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv873264	chr1:228423647-228543800	Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv873265	chr1:228434395-228525008	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv873266	chr1:228434395-228537942	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv873267	chr1:228434395-228585837	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv873268	chr1:228442663-228537942	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv873269	chr1:228442663-228543800	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	nsv873270	chr1:228442663-228699477	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
18	nsv1009891	chr1:228450763-228742676	Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
19	nsv873272	chr1:228450868-228538968	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv873273	chr1:228450868-228556788	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv873274	chr1:228450868-228585837	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
22	esv1798020	chr1:228456147-228556788	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
23	esv1818776	chr1:228456147-228556788	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	nsv873275	chr1:228456147-228585837	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
25	nsv517545	chr1:228456147-228685999	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
26	nsv873276	chr1:228456943-228585837	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
27	nsv1013500	chr1:228459134-228849601	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
28	esv1808871	chr1:228464248-228529606	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
29	nsv549293	chr1:228464248-228529606	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
30	esv1850422	chr1:228464248-228556788	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
31	nsv468260	chr1:228464248-228556788	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
32	nsv549294	chr1:228464248-228556788	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
33	nsv873277	chr1:228464248-228556788	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
34	nsv873278	chr1:228464248-228585837	Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
35	nsv468271	chr1:228464248-228601638	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
36	nsv468283	chr1:228464248-228601638	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
37	nsv468294	chr1:228464248-228601638	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
38	nsv549295	chr1:228464248-228601638	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
39	nsv470780	chr1:228464248-228606965	Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
40	esv995050	chr1:228469242-228478757	Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228455400-228484800	Weak transcription	A549	lung
2	chr1:228456400-228485800	Weak transcription	Hela-S3	cervix
3	chr1:228463800-228481400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:228464200-228491600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:228464400-228478400	Strong transcription	Thymus	Thymus
6	chr1:228464400-228479600	Weak transcription	Right Atrium	heart
7	chr1:228464400-228481400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:228464400-228482000	Weak transcription	Fetal Kidney	kidney
9	chr1:228464400-228489200	Strong transcription	Left Ventricle	heart
10	chr1:228464600-228481400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:228464600-228483200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:228464600-228483200	Strong transcription	Fetal Intestine Small	intestine
13	chr1:228464600-228487000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:228465000-228483600	Strong transcription	Right Ventricle	heart
15	chr1:228465000-228498000	Weak transcription	Fetal Brain Male	brain
16	chr1:228465200-228483400	Weak transcription	Colonic Mucosa	Colon
17	chr1:228465200-228483400	Strong transcription	Fetal Stomach	stomach
18	chr1:228465600-228483400	Strong transcription	Fetal Brain Female	brain
19	chr1:228467200-228484200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:228468400-228482600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:228469200-228479800	Weak transcription	Pancreas	Pancrea
22	chr1:228471200-228484200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:228471600-228481400	Weak transcription	Aorta	Aorta
24	chr1:228471800-228483400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:228471800-228489200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr1:228472000-228482000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:228472200-228481600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:228472200-228484800	Strong transcription	Fetal Muscle Leg	muscle
29	chr1:228472200-228490000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:228472400-228481200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:228472400-228486000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:228472400-228486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr1:228472600-228481400	Weak transcription	Fetal Thymus	thymus
34	chr1:228472800-228479800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr1:228473000-228488400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr1:228473400-228478800	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr1:228473600-228478600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:228473600-228480800	Weak transcription	Fetal Heart	heart
39	chr1:228473600-228482200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:228473800-228478600	Strong transcription	Ovary	ovary
41	chr1:228474200-228482800	Weak transcription	Psoas Muscle	Psoas
42	chr1:228475200-228481200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr1:228475400-228481400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:228475400-228482200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr1:228475800-228481000	Weak transcription	Fetal Intestine Large	intestine
46	chr1:228476000-228480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:228476000-228482600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:228476200-228478400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr1:228476200-228484200	Weak transcription	Esophagus	oesophagus
50	chr1:228476600-228479200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links