Variant report

Variant	rs559586014
Chromosome Location	chr9:100747713-100747714
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100745732..100748566-chr9:100835046..100837989,2	MCF-7	breast:
3	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
4	chr10:75006711..75007399-chr9:100747059..100747804,2	Hela-S3	cervix:
5	chr8:86019469..86022152-chr9:100745432..100747844,2	MCF-7	breast:
6	chr9:100746762..100748663-chr9:100996503..100998801,2	MCF-7	breast:
7	chr9:100746284..100748016-chr9:100953069..100955569,2	MCF-7	breast:
8	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
9	chr9:100747093..100749560-chr9:100817849..100820641,3	MCF-7	breast:
10	chr9:100747573..100749679-chr9:100818342..100820607,2	K562	blood:
11	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
12	chr14:34417944..34420786-chr9:100744880..100747851,2	MCF-7	breast:
13	chr9:100746007..100747769-chr9:100880971..100883349,2	MCF-7	breast:
14	chr9:100458946..100460891-chr9:100746178..100747740,2	MCF-7	breast:
15	chr9:100393798..100396909-chr9:100744219..100748139,5	MCF-7	breast:
16	chr9:100744956..100747904-chr9:100835369..100837055,2	K562	blood:
17	chr13:96566533..96568077-chr9:100747317..100749032,2	MCF-7	breast:
18	chr9:100744716..100748585-chr9:100832900..100838437,10	MCF-7	breast:
19	chr9:100747352..100749216-chr9:100789908..100792300,2	K562	blood:
20	chr9:100744384..100747791-chr9:101014978..101019057,4	MCF-7	breast:
21	chr11:1770145..1772134-chr9:100745405..100747751,2	MCF-7	breast:
22	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
23	chr9:100745634..100748414-chr9:100792592..100795011,2	MCF-7	breast:
24	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
25	chr9:100747508..100749189-chr9:100765582..100767848,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000224001	Chromatin interaction
ENSG00000244242	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000133739	Chromatin interaction
ENSG00000136925	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000212521	Chromatin interaction
ENSG00000236756	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000201830	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3525787	chr9:100744481-100748729	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
3	esv3525788	chr9:100744481-100748729	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
4	esv3355582	chr9:100744831-100749229	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	esv3441780	chr9:100745156-100748104	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
6	esv3327191	chr9:100746156-100749004	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100744000-100747800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr9:100744200-100747800	Active TSS	Fetal Brain Female	brain
3	chr9:100744400-100747800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:100744600-100747800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:100744600-100747800	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr9:100744600-100747800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr9:100744600-100748000	Active TSS	Brain Angular Gyrus	brain
8	chr9:100744600-100748000	Active TSS	NHLF	lung
9	chr9:100744600-100748600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:100744800-100747800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:100744800-100747800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:100744800-100747800	Active TSS	Brain Substantia Nigra	brain
13	chr9:100744800-100747800	Active TSS	Fetal Intestine Large	intestine
14	chr9:100744800-100747800	Active TSS	Small Intestine	intestine
15	chr9:100744800-100748000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr9:100744800-100748000	Active TSS	Esophagus	oesophagus
17	chr9:100744800-100748000	Active TSS	Fetal Kidney	kidney
18	chr9:100744800-100748000	Active TSS	Right Atrium	heart
19	chr9:100744800-100748200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:100744800-100748400	Active TSS	HSMM	muscle
21	chr9:100745000-100747800	Active TSS	Brain Cingulate Gyrus	brain
22	chr9:100745000-100747800	Active TSS	Brain Hippocampus Middle	brain
23	chr9:100745000-100748000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:100745000-100748200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:100745200-100747800	Active TSS	Liver	Liver
26	chr9:100745200-100747800	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr9:100745200-100748000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr9:100745200-100748000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:100745200-100748400	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr9:100745400-100747800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:100745400-100748000	Active TSS	Placenta Amnion	Placenta Amnion
32	chr9:100745400-100748600	Active TSS	Colonic Mucosa	Colon
33	chr9:100746200-100748000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:100746600-100748000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr9:100746600-100748000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:100746600-100748200	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr9:100747000-100748000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:100747000-100748200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:100747200-100747800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:100747200-100747800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr9:100747200-100747800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:100747200-100747800	Flanking Active TSS	Lung	lung
43	chr9:100747200-100747800	Flanking Active TSS	Pancreas	Pancrea
44	chr9:100747200-100747800	Flanking Active TSS	Right Ventricle	heart
45	chr9:100747200-100748000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:100747200-100748200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr9:100747200-100748400	Flanking Active TSS	Dnd41	blood
48	chr9:100747200-100748400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr9:100747200-100748800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:100747200-100748800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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