The 2.0 version of rSNPBase

Variant report

Variant rs55960291
Chromosome Location chr1:212178012-212178013
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212112800-212202000 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:212114200-212185800 Weak transcription Brain Angular Gyrus brain
3 chr1:212123800-212198200 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:212129400-212204000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:212133400-212188200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:212133800-212208000 Weak transcription Gastric stomach
7 chr1:212134000-212207600 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:212134000-212207800 Weak transcription Colonic Mucosa Colon
9 chr1:212136600-212204000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:212146000-212185600 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:212148800-212207600 Weak transcription Rectal Smooth Muscle rectum
12 chr1:212149200-212180600 Weak transcription HSMMtube muscle
13 chr1:212149200-212199800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:212151800-212187000 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr1:212152800-212201600 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:212153400-212203600 Weak transcription Psoas Muscle Psoas
17 chr1:212153600-212202600 Weak transcription H9 Cell Line embryonic stem cell
18 chr1:212157000-212180000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:212157600-212183000 Weak transcription HUVEC blood vessel
20 chr1:212159600-212178200 Weak transcription H1 Cell Line embryonic stem cell
21 chr1:212160000-212189400 Weak transcription NHDF-Ad bronchial
22 chr1:212160200-212178200 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr1:212160200-212182200 Weak transcription NHEK skin
24 chr1:212160200-212182800 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:212160200-212199800 Weak transcription Brain Substantia Nigra brain
26 chr1:212160200-212202600 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:212160400-212179400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:212160400-212179800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:212160400-212182600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:212160400-212182800 Weak transcription Brain Hippocampus Middle brain
31 chr1:212160800-212178200 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr1:212161200-212180000 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:212161200-212180600 Weak transcription HepG2 liver
34 chr1:212161200-212189200 Weak transcription NH-A brain
35 chr1:212161400-212178200 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr1:212161400-212178200 Weak transcription HSMM muscle
37 chr1:212161800-212178200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:212161800-212181000 Weak transcription NHLF lung
39 chr1:212161800-212182200 Weak transcription Colon Smooth Muscle Colon
40 chr1:212168800-212185200 Strong transcription Fetal Thymus thymus
41 chr1:212170000-212184600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:212170200-212191400 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:212170200-212197600 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr1:212170400-212185000 Strong transcription Dnd41 blood
45 chr1:212170400-212202600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr1:212170600-212194200 Weak transcription Placenta Placenta
47 chr1:212170800-212178200 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr1:212170800-212178200 Weak transcription HMEC breast
49 chr1:212170800-212199200 Weak transcription Pancreas Pancrea
50 chr1:212170800-212207800 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015