Variant report

Variant	rs559613446
Chromosome Location	chr6:36703610-36703611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:36703560-36703710	NHDF-neo	bronchial:	n/a	n/a
2	ELF1	chr6:36703210-36703710	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:36701895-36703832	HL-60	blood:	n/a	n/a
4	ZNF263	chr6:36703374-36703976	HEK293-T-REx	kidney:	n/a	n/a
5	CTCF	chr6:36703560-36703710	AG04449	skin:	n/a	n/a
6	CTCF	chr6:36703540-36703690	HUVEC	blood vessel:	n/a	n/a
7	MAZ	chr6:36703482-36703673	K562	blood:	n/a	n/a
8	MAZ	chr6:36702661-36703935	IMR90	lung:	n/a	n/a
9	POLR2A	chr6:36702134-36704101	NB4	blood:	n/a	n/a
10	CTCF	chr6:36703580-36703730	BJ	skin:	n/a	n/a
11	CTCF	chr6:36703560-36703710	AG10803	skin:	n/a	n/a
12	STAT3	chr6:36703568-36703768	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr6:36701915-36703986	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36583432..36585248-chr6:36700120..36704013,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000220349	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885810	chr6:36695223-36714491	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885812	chr6:36696904-36705684	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv819609	chr6:36700559-36708943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv520755	chr6:36702284-36713720	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv885813	chr6:36702843-36713720	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36702000-36704000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:36702200-36703800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:36702200-36703800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:36702200-36703800	Enhancers	Spleen	Spleen
5	chr6:36702200-36704000	Enhancers	Esophagus	oesophagus
6	chr6:36702200-36704000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:36702200-36704200	Enhancers	Stomach Mucosa	stomach
8	chr6:36702200-36704800	Enhancers	Lung	lung
9	chr6:36702400-36703800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:36702400-36704000	Enhancers	Psoas Muscle	Psoas
11	chr6:36702400-36704000	Enhancers	Right Atrium	heart
12	chr6:36702400-36704000	Enhancers	Right Ventricle	heart
13	chr6:36702400-36704200	Enhancers	Small Intestine	intestine
14	chr6:36702600-36703800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:36702600-36703800	Flanking Active TSS	Osteobl	bone
16	chr6:36702600-36704000	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:36702600-36704000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr6:36702800-36703800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:36702800-36703800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:36702800-36703800	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr6:36702800-36704000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36702800-36704000	Enhancers	Fetal Heart	heart
23	chr6:36702800-36704200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:36703000-36703800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:36703000-36703800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:36703000-36704000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:36703200-36703800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:36703200-36703800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:36703200-36703800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:36703200-36704200	Enhancers	HUVEC	blood vessel
31	chr6:36703400-36703800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:36703400-36703800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:36703400-36703800	Enhancers	Primary B cells from peripheral blood	blood
34	chr6:36703400-36703800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr6:36703400-36703800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:36703400-36703800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:36703400-36703800	Enhancers	Brain Angular Gyrus	brain
38	chr6:36703400-36703800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:36703400-36703800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:36703400-36703800	Bivalent Enhancer	Fetal Stomach	stomach
41	chr6:36703400-36703800	Enhancers	Ovary	ovary
42	chr6:36703400-36703800	Enhancers	NHEK	skin
43	chr6:36703400-36704000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:36703400-36704000	Enhancers	Brain Anterior Caudate	brain
45	chr6:36703400-36704000	Enhancers	Brain Substantia Nigra	brain
46	chr6:36703400-36704000	Enhancers	Colonic Mucosa	Colon
47	chr6:36703400-36704000	Enhancers	Placenta	Placenta
48	chr6:36703400-36704000	Enhancers	Left Ventricle	heart
49	chr6:36703400-36704200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:36703400-36704200	Enhancers	Fetal Lung	lung

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