Variant report

Variant	rs559624514
Chromosome Location	chr12:124595379-124595380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1799776	chr12:124594370-124614538	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124594400-124595600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:124594400-124596000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:124594400-124596200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:124594400-124596800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:124594600-124595800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:124594600-124595800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:124594600-124596000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:124594600-124596000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:124594600-124596000	Flanking Active TSS	HUVEC	blood vessel
10	chr12:124594800-124595400	Enhancers	A549	lung
11	chr12:124594800-124595800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:124594800-124595800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:124594800-124596000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:124594800-124596000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr12:124594800-124596000	Enhancers	Primary hematopoietic stem cells	blood
16	chr12:124594800-124596000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:124595200-124595600	Weak transcription	K562	blood
18	chr12:124595200-124595800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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