Variant report

Variant	rs55962837
Chromosome Location	chr7:26497681-26497682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10486462	0.83[AMR][1000 genomes]
rs55700647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061744	0.83[AMR][1000 genomes]
rs73061760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73061773	1.00[AMR][1000 genomes]
rs73061779	1.00[AMR][1000 genomes]
rs73063789	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73067715	0.83[AMR][1000 genomes]
rs73072289	1.00[AFR][1000 genomes]
rs73074103	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26481600-26498400	Weak transcription	Brain Germinal Matrix	brain
2	chr7:26489400-26501000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:26492200-26498600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:26494200-26499400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:26494400-26499400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:26497400-26497800	Enhancers	Fetal Muscle Leg	muscle
7	chr7:26497400-26498000	Enhancers	HUVEC	blood vessel
8	chr7:26497400-26501600	Enhancers	Fetal Stomach	stomach
9	chr7:26497600-26497800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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