Variant report

Variant	rs559628640
Chromosome Location	chr11:10226360-10226361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv515552	chr11:10226268-10228809	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
2	chr11:10208800-10229400	Weak transcription	NHLF	lung
3	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:10221600-10227000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:10223400-10226400	Weak transcription	Left Ventricle	heart
7	chr11:10223800-10229600	Weak transcription	Osteobl	bone
8	chr11:10224600-10226600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr11:10224800-10227200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:10225000-10226800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:10225000-10227000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:10225400-10227400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:10225600-10228400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10226000-10227400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10226200-10227000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:10226200-10227400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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