Variant report

Variant	rs559630179
Chromosome Location	chr9:95876709-95876710
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95855552..95862102-chr9:95867626..95876894,17	K562	blood:
2	chr9:95875785..95878413-chr9:96024427..96026531,2	MCF-7	breast:
3	chr9:95874739..95878921-chr9:95879079..95884047,10	K562	blood:
4	chr9:95867099..95869631-chr9:95876073..95877812,2	K562	blood:
5	chr9:95874371..95880149-chr9:95880216..95885255,14	K562	blood:
6	chr9:95869643..95873929-chr9:95874567..95878954,6	MCF-7	breast:
7	chr9:95875459..95880390-chr9:95892230..95899028,13	K562	blood:
8	chr9:95856601..95858475-chr9:95874863..95877124,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223446	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv3405127	chr9:95876656-95879704	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
2	chr9:95861800-95882000	Weak transcription	HSMMtube	muscle
3	chr9:95862000-95878400	Weak transcription	Stomach Mucosa	stomach
4	chr9:95862000-95881800	Weak transcription	HUVEC	blood vessel
5	chr9:95862200-95878000	Weak transcription	HSMM	muscle
6	chr9:95862200-95878600	Weak transcription	Psoas Muscle	Psoas
7	chr9:95862200-95878600	Weak transcription	Right Atrium	heart
8	chr9:95866600-95878600	Weak transcription	NHDF-Ad	bronchial
9	chr9:95867000-95878400	Weak transcription	Fetal Lung	lung
10	chr9:95869000-95877600	Strong transcription	Fetal Intestine Small	intestine
11	chr9:95869200-95877600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr9:95869400-95877400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:95869400-95877400	Strong transcription	NHLF	lung
14	chr9:95869600-95877400	Strong transcription	Fetal Stomach	stomach
15	chr9:95869800-95876800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr9:95869800-95877400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:95869800-95877400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:95870000-95895400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:95870200-95877400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:95871000-95894200	Weak transcription	Dnd41	blood
21	chr9:95871200-95878400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:95871200-95878400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:95871200-95878400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:95871600-95877200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:95871600-95882000	Weak transcription	GM12878-XiMat	blood
26	chr9:95871800-95876800	Strong transcription	Colon Smooth Muscle	Colon
27	chr9:95872200-95877200	Weak transcription	Hela-S3	cervix
28	chr9:95872200-95881600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:95872200-95882000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:95872400-95876800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:95872400-95877000	Strong transcription	Fetal Brain Female	brain
32	chr9:95872400-95877200	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr9:95872400-95877200	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:95872400-95877400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:95872400-95878400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:95872600-95876800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr9:95872600-95876800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:95872600-95876800	Strong transcription	Colonic Mucosa	Colon
39	chr9:95872600-95876800	Strong transcription	Gastric	stomach
40	chr9:95872600-95877000	Strong transcription	Esophagus	oesophagus
41	chr9:95872600-95877000	Strong transcription	Thymus	Thymus
42	chr9:95872600-95877400	Strong transcription	Aorta	Aorta
43	chr9:95872600-95877600	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:95872800-95876800	Strong transcription	Lung	lung
45	chr9:95872800-95877000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:95872800-95877400	Strong transcription	Brain Germinal Matrix	brain
47	chr9:95872800-95878000	Enhancers	Primary B cells from cord blood	blood
48	chr9:95873000-95877200	Strong transcription	Brain Hippocampus Middle	brain
49	chr9:95873200-95877800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:95873400-95877200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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