Variant report

Variant	rs559634720
Chromosome Location	chr15:43585325-43585326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43583170..43585409-chr15:43590584..43593084,2	K562	blood:
2	chr15:43584770..43587744-chr15:43618210..43620882,2	MCF-7	breast:
3	chr15:43582742..43587018-chr15:43587403..43593084,5	K562	blood:
4	chr15:43477092..43479943-chr15:43584228..43585873,3	K562	blood:
5	chr15:43585058..43586868-chr15:43621413..43623111,2	K562	blood:
6	chr15:43578993..43581997-chr15:43583826..43586143,3	K562	blood:
7	chr15:43577270..43578995-chr15:43583941..43586463,2	K562	blood:
8	chr15:43585264..43587919-chr15:43621418..43624239,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000168803	Chromatin interaction
ENSG00000166946	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000261687	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3324196	chr15:43584885-43587433	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43584600-43585400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:43584600-43585600	Enhancers	Adipose Nuclei	Adipose
3	chr15:43584800-43585800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:43584800-43586000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:43584800-43586000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr15:43584800-43586400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:43585000-43585800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr15:43585000-43586600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:43585200-43585400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:43585200-43585600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr15:43585200-43585600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr15:43585200-43585800	Flanking Bivalent TSS/Enh	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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