Variant report

Variant	rs55964255
Chromosome Location	chr3:20742291-20742292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1500422	0.95[ASN][1000 genomes]
rs1566478	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1566479	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1604133	0.95[ASN][1000 genomes]
rs17809304	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17809565	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1846723	0.95[ASN][1000 genomes]
rs2366311	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2366534	0.95[ASN][1000 genomes]
rs2886697	1.00[ASN][1000 genomes]
rs4857964	0.83[AFR][1000 genomes]
rs4857967	0.83[AFR][1000 genomes]
rs4857968	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4858250	1.00[ASN][1000 genomes]
rs4858251	1.00[ASN][1000 genomes]
rs55686218	1.00[ASN][1000 genomes]
rs55712289	0.95[ASN][1000 genomes]
rs56135409	1.00[ASN][1000 genomes]
rs56168640	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56285459	0.95[ASN][1000 genomes]
rs56286961	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62234989	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62237468	0.83[AFR][1000 genomes]
rs62237495	0.83[AFR][1000 genomes]
rs62237497	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62237499	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62237500	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62237501	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62237503	0.95[ASN][1000 genomes]
rs62237504	0.95[ASN][1000 genomes]
rs62237505	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62237509	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62242111	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001006	chr3:20110743-20752628	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv536512	chr3:20110743-20752628	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv876598	chr3:20242143-20970042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv876599	chr3:20264950-20813009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20738400-20742400	Weak transcription	Fetal Lung	lung
2	chr3:20742200-20742600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:20742200-20742600	Enhancers	Psoas Muscle	Psoas
4	chr3:20742200-20742800	Enhancers	Fetal Heart	heart
5	chr3:20742200-20744000	Enhancers	Fetal Brain Male	brain

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