The 2.0 version of rSNPBase

Variant report

Variant rs559652220
Chromosome Location chr9:97591850-97591851
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:97563600-97594400 Weak transcription Primary T helper cells PMA-I stimulated --
2 chr9:97567400-97593400 Weak transcription Thymus Thymus
3 chr9:97570000-97594400 Weak transcription Dnd41 blood
4 chr9:97570000-97601400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr9:97571800-97622600 Weak transcription Primary B cells from cord blood blood
6 chr9:97572000-97601600 Weak transcription Primary T cells fromperipheralblood blood
7 chr9:97572600-97593600 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr9:97580600-97600200 Weak transcription Primary hematopoietic stem cells blood
9 chr9:97581800-97609600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr9:97582000-97599400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr9:97582200-97594000 Weak transcription NHEK skin
12 chr9:97584200-97593800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr9:97585000-97609600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr9:97589200-97592400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr9:97589200-97598800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr9:97589200-97600400 Weak transcription Primary T cells from cord blood blood
17 chr9:97589200-97602000 Weak transcription Lung lung
18 chr9:97589200-97605400 Weak transcription Spleen Spleen
19 chr9:97589200-97609400 Weak transcription Pancreas Pancrea
20 chr9:97589200-97622400 Weak transcription Aorta Aorta
21 chr9:97589400-97598600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr9:97589600-97592200 Enhancers HSMM muscle
23 chr9:97589600-97592200 Enhancers HSMMtube muscle
24 chr9:97590000-97596600 Weak transcription Fetal Heart heart
25 chr9:97590200-97592000 Weak transcription Colonic Mucosa Colon
26 chr9:97590200-97596800 Weak transcription Fetal Intestine Small intestine
27 chr9:97590400-97592000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr9:97590400-97592000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr9:97590400-97598600 Weak transcription Fetal Intestine Large intestine
30 chr9:97590400-97602000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr9:97590600-97592200 Enhancers A549 lung
32 chr9:97590600-97609600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr9:97590600-97616000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr9:97590800-97592000 Enhancers HepG2 liver
35 chr9:97591000-97592200 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr9:97591000-97593200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr9:97591000-97595800 Weak transcription Liver Liver
38 chr9:97591000-97609200 Weak transcription Osteobl bone
39 chr9:97591200-97592200 Enhancers Placenta Placenta
40 chr9:97591400-97592200 Enhancers Fetal Lung lung
41 chr9:97591600-97592000 Enhancers Brain Angular Gyrus brain
42 chr9:97591600-97592000 Enhancers Brain Hippocampus Middle brain
43 chr9:97591600-97592200 Enhancers Muscle Satellite Cultured Cells --
44 chr9:97591600-97592200 Enhancers Brain Inferior Temporal Lobe brain
45 chr9:97591600-97592200 Enhancers Fetal Stomach stomach
46 chr9:97591600-97592200 Enhancers Rectal Mucosa Donor 29 rectum
47 chr9:97591600-97592200 Enhancers Hela-S3 cervix
48 chr9:97591600-97592800 Enhancers GM12878-XiMat blood
49 chr9:97591800-97592000 Enhancers Brain Anterior Caudate brain
50 chr9:97591800-97592000 Enhancers Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015