Variant report

Variant	rs55966421
Chromosome Location	chr8:102829525-102829526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1557337	1.00[ASN][1000 genomes]
rs56249593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56363119	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61064375	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61551365	1.00[ASN][1000 genomes]
rs73275570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280809	1.00[ASN][1000 genomes]
rs73699653	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7842469	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102828200-102829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:102828400-102832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102829000-102829600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102829000-102829800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:102829000-102829800	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:102829000-102830800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102829200-102829600	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr8:102829400-102829600	Flanking Active TSS	Brain Angular Gyrus	brain
10	chr8:102829400-102829600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:102829400-102829600	Weak transcription	Brain Substantia Nigra	brain
12	chr8:102829400-102830200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr8:102829400-102830200	Enhancers	Brain Germinal Matrix	brain
14	chr8:102829400-102830200	Active TSS	Brain Hippocampus Middle	brain
15	chr8:102829400-102830800	Enhancers	Aorta	Aorta
16	chr8:102829400-102830800	Enhancers	Fetal Muscle Leg	muscle
17	chr8:102829400-102830800	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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